Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C1N50_RS09390 Genome accession   NZ_CP026321
Coordinates   1922778..1924199 (+) Length   473 a.a.
NCBI ID   WP_050913411.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-53     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1917778..1929199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N50_RS09365 (C1N50_09360) - 1918171..1918782 (-) 612 WP_103413246.1 flavin reductase family protein -
  C1N50_RS09375 (C1N50_09370) - 1919448..1920143 (+) 696 WP_103413247.1 NAD(P)H-binding protein -
  C1N50_RS09380 (C1N50_09375) - 1920337..1921710 (+) 1374 WP_103413248.1 L-cystine transporter -
  C1N50_RS09385 (C1N50_09380) - 1921936..1922616 (+) 681 WP_103413249.1 DUF1826 domain-containing protein -
  C1N50_RS09390 (C1N50_09385) sbcB 1922778..1924199 (+) 1422 WP_050913411.1 exodeoxyribonuclease I Machinery gene
  C1N50_RS09395 (C1N50_09390) - 1924258..1924632 (+) 375 WP_012127845.1 CidA/LrgA family protein -
  C1N50_RS09400 (C1N50_09395) - 1924634..1925311 (+) 678 WP_005428010.1 LrgB family protein -
  C1N50_RS09405 (C1N50_09400) cdd 1925576..1926463 (+) 888 WP_005427951.1 cytidine deaminase -
  C1N50_RS09410 (C1N50_09405) - 1926527..1927225 (-) 699 WP_005428015.1 hypothetical protein -
  C1N50_RS09415 (C1N50_09410) purT 1927434..1928609 (+) 1176 WP_103413250.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54511.81 Da        Isoelectric Point: 4.9269

>NTDB_id=268132 C1N50_RS09390 WP_050913411.1 1922778..1924199(+) (sbcB) [Vibrio campbellii strain BoB-53]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=268132 C1N50_RS09390 WP_050913411.1 1922778..1924199(+) (sbcB) [Vibrio campbellii strain BoB-53]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCACCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCCAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACAATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCAATCTTAGAGCTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGTGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATTATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCTTGGATGAACAAGAACAAAGACGCTGGGCACA
ACACTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795

Multiple sequence alignment