Detailed information NTG0268129

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: C1N50_RS03315
• Genome accession: NZ_CP026321
• Coordinates: 661598..664984 (-)
• Length: 1128 a.a.
• NCBI ID: WP_103412719.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain BoB-53
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 656598..669984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1N50_RS03300 (C1N50_03300)	-	656909..657934 (-)	1026	WP_010649800.1	ABC transporter permease	-
C1N50_RS03305 (C1N50_03305)	-	657937..658923 (-)	987	WP_005425282.1	ABC transporter permease	-
C1N50_RS03310 (C1N50_03310)	-	659094..660776 (-)	1683	WP_103412718.1	ABC transporter substrate-binding protein	-
C1N50_RS03315 (C1N50_03315)	chiS	661598..664984 (-)	3387	WP_103412719.1	response regulator	Regulator
C1N50_RS03325 (C1N50_03325)	rsmC	665212..666237 (-)	1026	WP_045369770.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
C1N50_RS03330 (C1N50_03330)	-	666314..667399 (-)	1086	WP_103412720.1	AI-2E family transporter	-
C1N50_RS03335 (C1N50_03335)	hemL	667759..669054 (-)	1296	WP_103412721.1	glutamate-1-semialdehyde 2,1-aminomutase	-
C1N50_RS03340 (C1N50_03340)	erpA	669301..669642 (+)	342	WP_005425270.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127291.99 Da
• Isoelectric Point: 5.2919

>NTDB_id=268129 C1N50_RS03315 WP_103412719.1 661598..664984(-) (chiS) [Vibrio campbellii strain BoB-53]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLEEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGHDIDEARENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNFGTNLLSGRYKDTALGKTFKRLSEDVSARRKVNEDYTPVVVSDFDIENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIAEINRDSSIDTLLVGSDHKPRTINTKQEDIQNSLEIVDKALAGETEVGTYSNRLGEE
MIAAFAPIETRGLTWALVVQLPEKEAFTRVHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATVVDDQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIKATESLAARGHFQIPEANFDNNDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQAEMRHIENKLLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELMREVLVDTMTHA
LEYWESVTGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILDHCKEQSPERAYIEAQRD
KMQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=268129 C1N50_RS03315 WP_103412719.1 661598..664984(-) (chiS) [Vibrio campbellii strain BoB-53]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGCCTGCAAAGCACGCTAATGACCGCGTTTTTGGTTCTTAGTATTAC
GCCACTGACGATCACTGCTATTTTCTTCCTCCAATCCCACAGTAAAGATTTGGAAGAACAGAGCACATCCCACTTGCTCT
CAGTCCGTGATACCAAACAACAACAGATCATCGACTACTTTGCAGCTCAAGAAACCGAAGTTATGGGCTTTGTTCGCTCA
GAATTGGCTTATGCCAGTGGCGGACGCTTCTACGGTTTGGTCAATGCCTTTAGCCGATTAGGCCACGACATCGACGAAGC
AAGAGAGAATGCACAGCAACGCTATATCAAAGGCAGCGGCGATCAAATCAAAACGTCGATTTTACCGGAATCTTCCAACT
ACGTTGGCAGTGAGCGTTATCGTCTTCTGCATAAACGTTATCACTGGGCTTACCTAGAGCTATTAAAGCGCTCTGATTTC
AACGATATTTTATTAGTTGATATCGACGGTAACGTTACTTATTCGATCAATAAAGATGATAACTTCGGCACCAACCTTCT
CAGCGGCCGTTACAAAGACACCGCTTTGGGAAAAACATTTAAACGCCTTTCCGAGGATGTAAGCGCGCGCCGAAAAGTCA
ATGAAGATTACACGCCTGTCGTGGTATCCGACTTTGACATTGAAAACGGTAAGCAAGTCGCTTGGTTAGGTGCGCCTATT
GTTCAGCAAGGCTATCTGCACAGCTATGCAATGTTCCGCCTGCCGAACAATGGCATCACAAAGCTGATTGCAGAAATCAA
TCGTGACTCTTCAATTGATACTTTATTAGTTGGCAGTGACCACAAACCTCGTACCATCAACACCAAGCAAGAGGACATCC
AAAACAGTTTAGAGATCGTCGACAAAGCTTTAGCTGGCGAAACGGAAGTGGGCACTTACAGCAACCGTTTAGGCGAAGAG
ATGATTGCGGCATTTGCACCTATTGAGACTCGCGGTCTCACTTGGGCTCTCGTTGTACAGCTTCCTGAGAAAGAGGCCTT
TACACGTGTCCATCAGCTCGAGAAACTGTTTGTCATTGCGATGCTAATAGCGATCATCTTGGTTGTGATTGCTTCACATT
ACTTATCTAATTTCATCACATCTCCGCTGCTTAAGCTGACTTGGGCAGCAGAGAAAGTATCTGCCGGCGATCTGGACGAA
ACCACTTTTAATACCGAGCGTAAAGATGAAATCGGTCGACTCGCAATCAGCTTTGAGCGTATGCAGCGTTCAATTCGTGA
AAAGATCCAAACCATCAAGCAACAAAACGAAGAGCTAGAGAGCAACATCAAACTGATCCAAAAGCAAAACGAAGAATTGC
AGTTGGCAGATAAGCTGAAAGATGAATTCCTAGCGACAACCTCTCACGAGTTACGCACACCATTGCACGGTATGGTTGGC
ATTGCAGAGACACTGGTGTCTGGTGCAAATGGCGCGATACCTGCGAGCCAGAAGTACCAATTGGACATCATCATCAAGAG
TGGTCAGCGCCTAGCAAACCTCGTTGATGATCTATTGGATTACCACAAGATGCGCTACGGCAGCATGGATATCCAAAAGT
CTGCAGTGAGCCTAGCCAGTGCAACACGCTTGGTGCTGGAGCTTTCTGGTCACCTATTGGGTAACAAAACCATCCGCATC
ATTAATCAAGTGCCAGCGGATCTGAAAGCAGTCTCAGCAGATCCTCAGCGTTTGGAACAAGTGCTGTATAACTTGATTGG
CAACGCTATTAAGTACACTTCAGAAGGCAAAATCGTTATCTCAGCGACCGTTGTAGACGATCAAGTCCGAGTACAAGTGG
TCGATACTGGTCAGGGTATTCCAGCTGAACACCTAGAGCATATCTTCGAACCTCTTATCCAAGCAGGTCAAGATGCTAGT
CGCTACCGTCAAGGTGCAGGTCTAGGTCTATCAATCAGCCGTCAACTTATCGAGTTGATGGGCGGTTCATTGTATGTCAG
CAGCCAACCTATGGTCGGAACGACATTCAGCTTCACCTTGCCACTCGCTAGTGAAGAAGAAATCAAAGCGACTGAAAGCC
TTGCCGCTCGCGGGCATTTCCAAATTCCAGAAGCGAACTTTGACAACAATGACGACTTGTCTCTACCTGAAAACCCAGAT
GGTCCATTGCTGTACGTTGCTGATGATGAGCCCGTCAACCTGCGCGTTCTTGAAAGCTTCTTAAGACTTGAAGGCTACCG
AGTTCGTACCATTTCAGACGGCCCTGAGACACTCGCTTTAATTGAACAAGAGAAGCCTGAGTTGCTGCTACTGGATATTA
TGATGCCAGGCATGAGTGGCTATCAGGTTTGTAGTGAACTGCGTGAAACTTACGATCATGCAGAGCTGCCAATCATTATG
CTCACAGCGCTAAGCCAAACCGAAGACCGCGTTAGGGGCTTTGAAGCGGGAGCGAACGATTACCTAACCAAACCATTTAA
TAAGCAAGAGCTCGCGGCACGTATTCAGGCCCACTTGACGGCAAGTCAGGCTGAAATGCGCCACATCGAGAACAAGTTAC
TGGAATCGGAGCTACGCCAGCGTGCTGAAGTCGAAGCCAGTCTGCTCGAGACACAAGGTAGACTGCTAGAACAGCTAGAA
TCGGCACCTGAGGCGATTATTTGTCTTCGTGAAGATCAACGTATTCGCTTTGCTAACGAAGCAGCATGTAAGCTATTTAA
ACGTAGCCTAGAACAGCTAAAACGTTCTTCCGCTGATGAGCTAATTGCACCTAAGTTCCTTACGGTTAAGCAGCCGCACT
ACTGTGGCAAGATTGATATCTACATCGAAGATATTCGTCAAAACATTGAAGCAGACATCCTCAAGCTGCCTGAAGGCTCT
GGTTTAGATGTCATGTATATCTTCAATGTAGGAGGCGGAGCGAATGCAGCTCGTATCCATAACCTAGAGACGGCAGTTGA
AGTACTTTCAAGTTACGCATTTGATGGTGATAAAGACCAGCTGCAGAAGCTGAAAGAACTTGGCGGTGAGTTTACTCGCC
TTGCTGATAAAGCATTGGGTAACAAGAAGGACAAACAAGAGCTGATGCGCGAAGTATTAGTCGATACGATGACTCACGCA
TTGGAATATTGGGAATCGGTGACTGGAGAAACCAAGTTTGCCTTTGCTGAACAAAGTGGTCTATGGCGCGTCTACCTCGA
CCGCAGTACATTACAAACACGTACGCTCGATAAATACATGCGTATTGAGACTTTGCCTAAGACACCGCGCTGGAGGACAG
TACTAAGCTCAATTGAGTTCATTCTGGATCACTGTAAAGAACAAAGCCCAGAACGCGCTTACATAGAGGCACAGCGCGAT
AAGATGCAAAGACTCCTTACGAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• HAMP domain (HAMP) (375-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.616	100	0.767