Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C1N50_RS03020 Genome accession   NZ_CP026321
Coordinates   593580..594098 (+) Length   172 a.a.
NCBI ID   WP_005426655.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-53     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 588580..599098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N50_RS03010 (C1N50_03010) gshA 591297..592865 (+) 1569 WP_050912914.1 glutamate--cysteine ligase -
  C1N50_RS03015 (C1N50_03015) - 592927..593490 (+) 564 WP_012128887.1 hypothetical protein -
  C1N50_RS03020 (C1N50_03020) luxS 593580..594098 (+) 519 WP_005426655.1 S-ribosylhomocysteine lyase Regulator
  C1N50_RS03025 (C1N50_03025) - 594187..595461 (-) 1275 WP_005426658.1 HlyC/CorC family transporter -
  C1N50_RS03030 (C1N50_03030) - 595617..596411 (-) 795 WP_005426660.1 inner membrane protein YpjD -
  C1N50_RS03035 (C1N50_03035) ffh 596625..598007 (+) 1383 WP_005462555.1 signal recognition particle protein -
  C1N50_RS03040 (C1N50_03040) rpsP 598218..598466 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  C1N50_RS03045 (C1N50_03045) rimM 598494..599042 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19059.82 Da        Isoelectric Point: 4.7297

>NTDB_id=268124 C1N50_RS03020 WP_005426655.1 593580..594098(+) (luxS) [Vibrio campbellii strain BoB-53]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=268124 C1N50_RS03020 WP_005426655.1 593580..594098(+) (luxS) [Vibrio campbellii strain BoB-53]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGACAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGATGTACTAAAAGTAGAAAGCCAAAACAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTAGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment