Detailed information NTG0268121

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C1N50_RS02865
• Genome accession: NZ_CP026321
• Coordinates: 565729..566715 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain BoB-53
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 560729..571715

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1N50_RS02830 (C1N50_02830)	ftsB	560736..561017 (+)	282	WP_005452106.1	cell division protein FtsB	-
C1N50_RS02835 (C1N50_02835)	ispD	561019..561729 (+)	711	WP_103412690.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C1N50_RS02840 (C1N50_02840)	ispF	561743..562219 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C1N50_RS02845 (C1N50_02845)	truD	562265..563308 (+)	1044	WP_077200201.1	tRNA pseudouridine(13) synthase TruD	-
C1N50_RS02850 (C1N50_02850)	surE	563308..564084 (+)	777	WP_005531673.1	5'/3'-nucleotidase SurE	-
C1N50_RS02855 (C1N50_02855)	-	564084..564710 (+)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C1N50_RS02860 (C1N50_02860)	-	564725..565648 (+)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
C1N50_RS02865 (C1N50_02865)	rpoS	565729..566715 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
C1N50_RS02870 (C1N50_02870)	mutS	566805..569366 (-)	2562	WP_103412691.1	DNA mismatch repair protein MutS	-
C1N50_RS02875 (C1N50_02875)	pncC	569452..569934 (+)	483	WP_103412692.1	nicotinamide-nucleotide amidase	-
C1N50_RS02880 (C1N50_02880)	recA	570135..571178 (+)	1044	WP_005425359.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=268121 C1N50_RS02865 WP_005425361.1 565729..566715(+) (rpoS) [Vibrio campbellii strain BoB-53]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=268121 C1N50_RS02865 WP_005425361.1 565729..566715(+) (rpoS) [Vibrio campbellii strain BoB-53]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCGGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATTGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTAATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGCCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTTGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857