Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C1N51_RS16675 Genome accession   NZ_CP026315
Coordinates   3476303..3477724 (+) Length   473 a.a.
NCBI ID   WP_005428021.1    Uniprot ID   A0AAQ2XXF0
Organism   Vibrio campbellii strain BoB-90     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3471303..3482724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS16655 (C1N51_16655) - 3471697..3472308 (-) 612 WP_103411047.1 flavin reductase family protein -
  C1N51_RS16660 (C1N51_16660) - 3472973..3473668 (+) 696 WP_103411048.1 NAD(P)H-binding protein -
  C1N51_RS16665 (C1N51_16665) - 3473862..3475235 (+) 1374 WP_103411049.1 L-cystine transporter -
  C1N51_RS16670 (C1N51_16670) - 3475461..3476141 (+) 681 WP_103411050.1 DUF1826 domain-containing protein -
  C1N51_RS16675 (C1N51_16675) sbcB 3476303..3477724 (+) 1422 WP_005428021.1 exodeoxyribonuclease I Machinery gene
  C1N51_RS16680 (C1N51_16680) - 3477783..3478157 (+) 375 WP_012127845.1 CidA/LrgA family protein -
  C1N51_RS16685 (C1N51_16685) - 3478159..3478836 (+) 678 WP_005428010.1 LrgB family protein -
  C1N51_RS16690 (C1N51_16690) cdd 3479101..3479988 (+) 888 WP_103411051.1 cytidine deaminase -
  C1N51_RS16695 (C1N51_16695) - 3480052..3480750 (-) 699 WP_038890351.1 hypothetical protein -
  C1N51_RS16700 (C1N51_16700) purT 3480959..3482134 (+) 1176 WP_103411052.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54525.84 Da        Isoelectric Point: 4.9293

>NTDB_id=268100 C1N51_RS16675 WP_005428021.1 3476303..3477724(+) (sbcB) [Vibrio campbellii strain BoB-90]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGELLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=268100 C1N51_RS16675 WP_005428021.1 3476303..3477724(+) (sbcB) [Vibrio campbellii strain BoB-90]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGGCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACTACTAGCCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCTAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGTGACGAATTGGGCGAGCTGCTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTTGCGCCTGCTAAGACTCTAACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTGATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAGACGGATCCGAACAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCTTGGATGAACAAGAGCAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment