Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   C1N51_RS16105 Genome accession   NZ_CP026315
Coordinates   3345770..3347311 (+) Length   513 a.a.
NCBI ID   WP_005427698.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3340770..3352311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS16080 (C1N51_16080) - 3341175..3341495 (+) 321 WP_005528376.1 STAS domain-containing protein -
  C1N51_RS16085 (C1N51_16085) - 3341521..3342375 (+) 855 WP_103410992.1 OmpA family protein -
  C1N51_RS16090 (C1N51_16090) - 3342372..3344474 (+) 2103 WP_103410993.1 SLBB domain-containing protein -
  C1N51_RS16095 (C1N51_16095) - 3344474..3345163 (+) 690 WP_103410994.1 AAA family ATPase -
  C1N51_RS16100 (C1N51_16100) - 3345176..3345559 (+) 384 WP_051118721.1 Hpt domain-containing protein -
  C1N51_RS16105 (C1N51_16105) luxO 3345770..3347311 (+) 1542 WP_005427698.1 sigma-54-dependent transcriptional regulator Regulator
  C1N51_RS16110 (C1N51_16110) - 3347286..3348362 (+) 1077 WP_103410995.1 glycosyltransferase -
  C1N51_RS16115 (C1N51_16115) - 3348515..3349699 (+) 1185 WP_103410996.1 glycosyltransferase -
  C1N51_RS16120 (C1N51_16120) - 3349710..3350882 (+) 1173 WP_103410997.1 glycosyltransferase family 4 protein -
  C1N51_RS16125 (C1N51_16125) - 3350875..3352296 (+) 1422 WP_103410998.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 57485.42 Da        Isoelectric Point: 6.0424

>NTDB_id=268099 C1N51_RS16105 WP_005427698.1 3345770..3347311(+) (luxO) [Vibrio campbellii strain BoB-90]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIEHNKPQLIILDLKLPDMSGEDVLDWINENEIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLLTYAKQDKKKFKHIGNDVQHVIKNYDWPGNVRQLQNIIRNIVVLNDEDKVTLPHLPVQLTRKPEKTPSVSPA
NAVSVKETSFITEQTDSVQNEAFPTSEPASATYSFSDPENQPTISGAQRASVYFNSDGTIRPMWKVEREAIQNAIAYCDG
NVLNAAVMLELSPSTVYRKKQAWEADEANLKQS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=268099 C1N51_RS16105 WP_005427698.1 3345770..3347311(+) (luxO) [Vibrio campbellii strain BoB-90]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTACGTCAAGGATGAACCTTA
CGACATCTTCCACGTTGAAACTGGACGTGAGGCGATTCAATTCATTGAGCACAACAAACCACAACTTATTATTCTCGACC
TAAAACTTCCAGACATGTCCGGAGAAGACGTTCTTGATTGGATTAATGAGAATGAGATTCCAACCTCTGTCATCATAGCA
ACGGCGCATGGTAGCGTTGATCTAGCCGTCAACCTGATCCAGAAAGGCGCAGAAGATTTCCTAGAAAAACCCATCAATGC
CGATCGTTTGAAAACCTCCGTTGCCTTGCATTTAAAACGCGCCAAACTAGAAAATCTCGTCGAGAACATTCAATCGACTT
TCGATCGTCACAACTATCACGGATTTATTGGCTCTAGCCTTCCAATGCAGGCGGTTTACAAAACCATTGATGCAGTTGCC
CCGACCTCAGCTAGCGTGTTTATCGTTGGTGAAAGTGGAACGGGTAAAGAAGTGTGTGCCGAAGCGGTTCACCGACAAAG
TGATCGCAGAGACAAGCCATTCATTGCAATTAACTGCGGCGCTATCCCTCGAGATTTGATGGAAAGCGAAATATTTGGCC
ATGTAAAGGGGGCTTTCACTGGCGCTACCACCGATCGTAAAGGTGCAGCGACCCTTGCTCATGGCGGCACACTATTCTTG
GACGAACTGTGTGAAATGGAGCTAGAGATGCAGAAAAAGTTATTACGCTTTCTGCAAACGGGAACCTACACGCCTCTCGG
GGGCACCAAAGAGATGAAGGTCGATGTTCGTATTATCTGTGCAACCAACCGAGACCCTCTGAAAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTGTATTATCGCGTTCATGTCGTTCCCATCGACATGCCGCCGCTAAGAGAAAGAGGCAGTGACATT
GTCACGCTAGCGAAGCACTTTTTGCTCACTTATGCCAAACAAGATAAGAAGAAGTTCAAACACATCGGTAACGACGTTCA
GCATGTCATTAAAAACTACGACTGGCCAGGGAATGTTCGCCAGCTACAAAACATCATTCGTAACATTGTTGTATTAAATG
ATGAAGATAAGGTCACGCTACCGCACTTGCCTGTTCAACTGACTCGTAAACCGGAAAAGACGCCTTCTGTATCGCCTGCG
AATGCTGTGAGCGTAAAAGAAACGAGCTTCATTACCGAACAAACCGACTCCGTGCAGAATGAAGCCTTCCCAACCTCGGA
GCCAGCAAGCGCCACCTATTCTTTCTCTGATCCTGAAAACCAACCAACTATCTCTGGAGCACAAAGGGCTTCAGTCTATT
TTAATTCAGACGGCACCATTCGTCCGATGTGGAAAGTCGAGCGAGAGGCGATTCAAAACGCAATTGCTTACTGTGATGGT
AACGTACTTAACGCTGCGGTGATGTTGGAACTCAGCCCTTCAACGGTCTACCGCAAAAAACAAGCGTGGGAAGCAGATGA
AGCTAATCTCAAACAATCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(463-499)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.598

97.076

0.481

Multiple sequence alignment