Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   C1N51_RS12540 Genome accession   NZ_CP026315
Coordinates   2608308..2609711 (+) Length   467 a.a.
NCBI ID   WP_005433212.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2603308..2614711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS12520 (C1N51_12520) - 2603333..2604664 (+) 1332 WP_103410712.1 excinuclease ABC subunit B -
  C1N51_RS12525 (C1N51_12525) - 2604684..2605124 (+) 441 WP_103410713.1 hypothetical protein -
  C1N51_RS12535 (C1N51_12535) uvrB 2605935..2607965 (+) 2031 WP_045379097.1 excinuclease ABC subunit UvrB -
  C1N51_RS12540 (C1N51_12540) luxO 2608308..2609711 (+) 1404 WP_005433212.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  C1N51_RS12545 (C1N51_12545) luxU 2609708..2610052 (+) 345 WP_103410714.1 quorum-sensing phosphorelay protein LuxU -
  C1N51_RS12550 (C1N51_12550) - 2610169..2611062 (-) 894 WP_005531401.1 YvcK family protein -
  C1N51_RS12555 (C1N51_12555) moaA 2611360..2612349 (+) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  C1N51_RS12560 (C1N51_12560) moaB 2612450..2612962 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  C1N51_RS12565 (C1N51_12565) moaC 2612989..2613465 (+) 477 WP_005439664.1 cyclic pyranopterin monophosphate synthase MoaC -
  C1N51_RS12570 (C1N51_12570) moaD 2613465..2613722 (+) 258 WP_103410715.1 molybdopterin synthase sulfur carrier subunit -
  C1N51_RS12575 (C1N51_12575) moaE 2613724..2614179 (+) 456 WP_005433207.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52136.65 Da        Isoelectric Point: 5.8849

>NTDB_id=268097 C1N51_RS12540 WP_005433212.1 2608308..2609711(+) (luxO) [Vibrio campbellii strain BoB-90]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=268097 C1N51_RS12540 WP_005433212.1 2608308..2609711(+) (luxO) [Vibrio campbellii strain BoB-90]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTATCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACAGCCCATGGTTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGTACC
ATTGACTCGGCAGCGAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCCGAAGC
GATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTTCTTGATGAGCTCTGTGAAATGGATCTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTGCGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTACACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGACGTTATTGAAATTGCATACTCGTTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
TGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAGTTGCAAAACGTATTGCGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGCTGCCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATCATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829

Multiple sequence alignment