Detailed information NTG0268096

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: C1N51_RS10380
• Genome accession: NZ_CP026315
• Coordinates: 2144208..2147594 (-)
• Length: 1128 a.a.
• NCBI ID: WP_103410556.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain BoB-90
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2139208..2152594

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1N51_RS10365 (C1N51_10365)	-	2139518..2140543 (-)	1026	WP_005446315.1	ABC transporter permease	-
C1N51_RS10370 (C1N51_10370)	-	2140546..2141532 (-)	987	WP_005425282.1	ABC transporter permease	-
C1N51_RS10375 (C1N51_10375)	-	2141703..2143385 (-)	1683	WP_005425281.1	ABC transporter substrate-binding protein	-
C1N51_RS10380 (C1N51_10380)	chiS	2144208..2147594 (-)	3387	WP_103410556.1	response regulator	Regulator
C1N51_RS10390 (C1N51_10390)	rsmC	2147822..2148847 (-)	1026	WP_103410557.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
C1N51_RS10395 (C1N51_10395)	-	2148924..2150009 (-)	1086	WP_005425277.1	AI-2E family transporter	-
C1N51_RS10400 (C1N51_10400)	hemL	2150368..2151663 (-)	1296	WP_005425271.1	glutamate-1-semialdehyde 2,1-aminomutase	-
C1N51_RS10405 (C1N51_10405)	erpA	2151910..2152251 (+)	342	WP_005425270.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127244.98 Da
• Isoelectric Point: 5.3401

>NTDB_id=268096 C1N51_RS10380 WP_103410556.1 2144208..2147594(-) (chiS) [Vibrio campbellii strain BoB-90]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLEEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGHDIDEARENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNFGTNLLSGRYKDTALGKTFKRLSEDVSARRKVNEDYTPVVVSDFDIENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIAEINRDSSIDTLLVGSDHKPRTINTKQEDIQNSLEIVDKALAGETEVGTYSNRLGEE
MIAAFAPIETRGLTWALVVQLPEKEAFARVHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATVVDDQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLANEEEIKATESLAARGHFQIPEANFDNNDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCSELRETYGHAELPIIM
LTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQAEMRHIENKLLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELMREVLVDTMTHA
LEYWESVTGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KMQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=268096 C1N51_RS10380 WP_103410556.1 2144208..2147594(-) (chiS) [Vibrio campbellii strain BoB-90]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGCCTGCAAAGCACGCTAATGACCGCGTTTTTGGTTCTTAGTATTAC
GCCACTGACGATCACTGCTATTTTCTTCCTCCAATCCCACAGTAAAGATTTGGAAGAACAGAGCACATCCCATTTGCTCT
CAGTCCGTGATACCAAACAACAACAGATCATCGACTACTTTGCAGCTCAAGAAACCGAAGTTATGGGCTTTGTTCGCTCA
GAATTGGCTTATGCCAGTGGCGGGCGCTTCTACGGTTTGGTCAATGCCTTTAGCCGATTAGGCCACGACATCGATGAAGC
AAGAGAGAATGCACAGCAACGCTATATCAAAGGCAGCGGCGATCAAATCAAAACGTCGATTTTACCGGAATCTTCCAACT
ACGTTGGCAGTGAGCGTTATCGTCTTCTGCATAAACGTTATCACTGGGCTTACCTAGAGCTATTAAAGCGCTCTGATTTC
AACGATATTTTATTAGTTGATATCGACGGTAATGTTACTTATTCGATCAATAAAGATGATAACTTCGGCACCAACCTCCT
CAGCGGCCGTTACAAAGACACCGCTTTGGGAAAAACATTTAAACGCCTCTCCGAGGATGTAAGCGCGCGCCGAAAAGTGA
ATGAAGATTACACGCCTGTCGTGGTATCCGACTTTGACATTGAAAACGGTAAGCAAGTCGCTTGGTTGGGTGCGCCTATT
GTTCAGCAAGGCTATCTGCACAGCTATGCAATGTTCCGCTTGCCGAACAATGGCATCACAAAGCTGATTGCAGAAATCAA
TCGTGACTCTTCAATTGATACCTTATTAGTTGGCAGCGACCACAAACCTCGTACCATCAACACCAAACAAGAAGACATCC
AAAACAGTTTAGAGATCGTCGACAAAGCTTTAGCTGGCGAAACGGAAGTGGGCACTTACAGCAACCGTTTAGGCGAAGAG
ATGATTGCGGCATTTGCACCTATTGAGACTCGCGGTCTCACTTGGGCTCTCGTTGTACAGCTTCCTGAGAAAGAGGCCTT
TGCACGTGTCCATCAGCTCGAGAAACTGTTTGTCATTGCGATGCTAATAGCGATCATCTTGGTTGTGATTGCTTCACACT
ACTTATCTAATTTCATCACCTCTCCGCTGCTTAAGCTGACTTGGGCAGCAGAGAAAGTATCTGCCGGCGATCTAGACGAA
ACCACCTTTAATACCGAGCGTAAAGATGAAATCGGTCGACTCGCAATCAGCTTTGAGCGTATGCAGCGTTCAATTCGTGA
AAAGATCCAAACCATCAAGCAACAAAACGAAGAGCTAGAGAGCAACATCAAACTGATCCAAAAGCAAAACGAAGAATTGC
AGTTGGCAGATAAGCTGAAAGATGAATTCCTAGCAACGACGTCTCACGAGTTGCGTACACCATTGCACGGTATGGTTGGC
ATTGCAGAGACACTGGTGTCTGGTGCAAATGGCGCAATACCTGCGAGCCAGAAGTACCAATTGGACATCATCATCAAGAG
TGGTCAGCGCCTAGCAAACCTCGTTGATGATCTATTGGATTACCACAAGATGCGCTACGGCAGCATGGATATCCAAAAGT
CTGCAGTGAGCCTAGCCAGTGCAACACGCTTGGTGCTGGAGCTTTCTGGTCACCTATTGGGTAACAAAACCATCCGCATC
ATTAATCAAGTGCCAGCGGATCTGAAAGCAGTCTCAGCAGATCCTCAGCGTTTGGAACAAGTGCTGTATAACTTGATTGG
CAACGCTATTAAGTACACTTCAGAAGGCAAAATCGTTATCTCAGCGACCGTTGTAGATGATCAAGTCCGAGTACAAGTGG
TCGACACTGGTCAGGGTATTCCTGCTGAGCACTTAGAGCACATCTTTGAACCTCTCATCCAAGCAGGTCAAGATGCTAGT
CGTTACCGTCAAGGTGCAGGACTAGGTCTATCTATCAGCCGTCAACTTATCGAGTTGATGGGCGGTTCATTGTATGTCAG
CAGCCAACCTATGGTCGGAACGACATTCAGCTTCACCTTGCCACTCGCTAATGAAGAAGAAATCAAAGCGACGGAAAGCC
TTGCCGCTCGCGGGCATTTCCAAATTCCAGAAGCGAACTTTGACAACAATGACGACTTGTCTCTACCTGAAAACCCAGAT
GGTCCATTGCTGTACGTTGCTGATGATGAGCCCGTCAACCTGCGCGTTCTTGAAAGCTTCTTAAGACTTGAAGGCTACCG
AGTTCGTACCATTTCAGACGGCCCTGAGACACTCGCTTTAATTGAACAAGAGAAGCCTGAGTTGCTGCTACTGGATATTA
TGATGCCAGGCATGAGTGGCTATCAGGTTTGTAGTGAACTGCGTGAAACTTACGGTCATGCAGAGCTGCCAATCATTATG
CTCACAGCGCTAAGCCAAACCGAAGACCGCGTTAGGGGCTTTGAAGCGGGAGCGAACGATTACCTAACCAAACCATTTAA
TAAGCAAGAGCTCGCGGCACGTATTCAGGCCCACTTGACGGCAAGTCAGGCTGAAATGCGCCACATCGAGAACAAGTTAC
TGGAATCGGAGCTACGCCAGCGTGCTGAAGTCGAAGCCAGCCTGCTCGAGACACAAGGTAGACTGCTAGAACAGCTAGAA
TCGGCACCTGAGGCGATTATTTGTCTTCGTGAAGATCAACGTATTCGCTTTGCTAACGAAGCAGCATGTAAGCTATTTAA
ACGTAGCCTAGAACAGCTAAAACGTTCTTCCGCTGATGAGCTAATTGCACCTAAGTTCCTTACGGTTAAGCAGCCGCACT
ACTGTGGCAAGATTGATATCTACATCGAAGATATTCGTCAAAACATTGAAGCAGACATCCTCAAGCTGCCTGAAGGCTCT
GGTTTAGATGTCATGTATATCTTCAATGTAGGAGGCGGCGCGAATGCAGCTCGTATCCATAACCTAGAGACGGCCGTTGA
AGTACTTTCAAGTTACGCATTTGATGGTGATAAAGACCAGCTGCAGAAGCTGAAAGAACTTGGCGGTGAGTTTACTCGCC
TTGCTGATAAAGCATTGGGTAACAAGAAGGACAAACAAGAGCTGATGCGCGAAGTATTAGTCGATACGATGACTCATGCA
TTGGAATATTGGGAATCGGTGACTGGAGAAACTAAGTTTGCCTTTGCTGAACAAAGTGGTTTATGGCGCGTCTACCTCGA
CCGCAGTACATTGCAAACACGTACGCTCGATAAATACATGCGTATTGAGACTTTGCCTAAGACACCGCGCTGGAGGACAG
TACTAAGCTCAATTGAGTTCATTCTGGAGCACTGTAAAGAACAAAGCCCAGAACGCGCTTACATAGAGGCACAGCGCGAT
AAGATGCAAAGACTCCTTACGAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.616	100	0.767