Detailed information NTG0268088

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C1N51_RS09955
• Genome accession: NZ_CP026315
• Coordinates: 2053364..2054350 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain BoB-90
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2048364..2059350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1N51_RS09920 (C1N51_09920)	ftsB	2048370..2048651 (+)	282	WP_005452106.1	cell division protein FtsB	-
C1N51_RS09925 (C1N51_09925)	ispD	2048653..2049363 (+)	711	WP_103410536.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C1N51_RS09930 (C1N51_09930)	ispF	2049378..2049854 (+)	477	WP_103410537.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C1N51_RS09935 (C1N51_09935)	truD	2049900..2050943 (+)	1044	WP_086368978.1	tRNA pseudouridine(13) synthase TruD	-
C1N51_RS09940 (C1N51_09940)	surE	2050943..2051719 (+)	777	WP_080765350.1	5'/3'-nucleotidase SurE	-
C1N51_RS09945 (C1N51_09945)	-	2051719..2052345 (+)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C1N51_RS09950 (C1N51_09950)	-	2052360..2053283 (+)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
C1N51_RS09955 (C1N51_09955)	rpoS	2053364..2054350 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
C1N51_RS09960 (C1N51_09960)	mutS	2054439..2057000 (-)	2562	WP_038891104.1	DNA mismatch repair protein MutS	-
C1N51_RS09965 (C1N51_09965)	pncC	2057086..2057568 (+)	483	WP_050919027.1	nicotinamide-nucleotide amidase	-
C1N51_RS09970 (C1N51_09970)	recA	2057769..2058812 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=268088 C1N51_RS09955 WP_005425361.1 2053364..2054350(+) (rpoS) [Vibrio campbellii strain BoB-90]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=268088 C1N51_RS09955 WP_005425361.1 2053364..2054350(+) (rpoS) [Vibrio campbellii strain BoB-90]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTACCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACGCCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857