Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2124_RS09590 Genome accession   NZ_CP026307
Coordinates   2072593..2073957 (-) Length   454 a.a.
NCBI ID   WP_014617180.1    Uniprot ID   F6G1Z9
Organism   Ralstonia solanacearum strain IBSBF 2571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2067593..2078957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2124_RS09575 (C2124_09560) - 2068504..2070468 (+) 1965 WP_042550048.1 ATP-binding cassette domain-containing protein -
  C2124_RS09580 (C2124_09565) - 2070500..2071606 (+) 1107 WP_014617179.1 CaiB/BaiF CoA transferase family protein -
  C2124_RS09585 (C2124_09570) - 2072020..2072499 (-) 480 WP_003264639.1 disulfide bond formation protein B -
  C2124_RS09590 (C2124_09575) radA 2072593..2073957 (-) 1365 WP_014617180.1 DNA repair protein RadA Machinery gene
  C2124_RS09595 (C2124_09580) alr 2074037..2075164 (-) 1128 WP_039549443.1 alanine racemase -
  C2124_RS09600 (C2124_09585) lplT 2075790..2077106 (+) 1317 WP_039549481.1 lysophospholipid transporter LplT -
  C2124_RS09605 (C2124_09590) - 2077172..2078017 (-) 846 WP_014617184.1 uracil-DNA glycosylase -
  C2124_RS09610 (C2124_09595) rimI 2078088..2078615 (-) 528 WP_014617185.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48291.66 Da        Isoelectric Point: 7.1114

>NTDB_id=268050 C2124_RS09590 WP_014617180.1 2072593..2073957(-) (radA) [Ralstonia solanacearum strain IBSBF 2571]
MAKSKTVYTCTECGGTSPKWAGQCPHCQQWNTLVETVAQPAAGARFQSLASSATVRKLADIDAEDVPRFSSGIDEFDRVL
GGGLVGGGVVLIGGDPGIGKSTLLLQALSNLAANRRVLYVSGEESGAQIALRARRLGIESPNLALLAEIQLERIQATIEA
EKPEVVVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKRLDVTTILVGHVTKEGALAGPRVLEHIVDTVLYFEGDTH
SAYRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQTVPGSCVLVTQEGTRPLLVEIQALVDAAGVPNPRR
LAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPCGLVVFGEIGLAGEIRP
TPRGQERLKEAAKLGFSIAVIPKSNAPKQPIDGLQVIAVERIEQAIDRVRGLET

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=268050 C2124_RS09590 WP_014617180.1 2072593..2073957(-) (radA) [Ralstonia solanacearum strain IBSBF 2571]
TTGGCCAAGAGCAAGACGGTCTATACGTGTACCGAATGCGGCGGTACGTCGCCGAAATGGGCGGGGCAGTGCCCGCATTG
CCAGCAATGGAACACGCTGGTGGAAACCGTGGCGCAGCCGGCCGCCGGTGCGCGCTTCCAGTCGCTGGCATCGAGCGCCA
CGGTGCGCAAGCTGGCGGACATCGACGCGGAGGACGTGCCGCGCTTCTCCAGCGGCATCGATGAATTCGATCGCGTGCTG
GGCGGCGGCCTGGTCGGCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGGC
GCTGTCCAACCTGGCGGCCAACCGGCGCGTGCTGTACGTGAGCGGCGAGGAGTCCGGCGCGCAGATCGCGCTGCGGGCGC
GGCGCCTGGGCATCGAGAGCCCGAACTTGGCGCTGCTGGCCGAGATTCAGCTCGAGCGCATCCAGGCGACCATCGAGGCG
GAGAAGCCCGAGGTGGTCGTCATCGATTCGATCCAGACGCTGTACTCGGAGGCACTGACCTCGGCGCCAGGCTCGGTGGC
CCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCCAAGCGGCTGGACGTGACCACCATCCTGGTCGGCCATGTGA
CCAAGGAAGGCGCGCTGGCGGGTCCGCGCGTGCTGGAGCACATCGTCGACACGGTGCTGTATTTCGAGGGCGATACGCAT
TCGGCCTACCGGCTGGTGCGGGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGTGTGTTCGCCATGACCGAGCG
CGGCCTGCGCGGCGTGGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGACCGTGCCGGGCTCGTGCGTGCTGG
TGACGCAAGAGGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGACGCGGCGGGCGTGCCGAATCCGCGGCGG
CTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGCGGGCATCGCGTGCTTCGA
CCAGGACGTGTTCCTCAATGCCGTGGGCGGGGTCAAGATCACCGAGCCGGCGGCGGACCTGGCGGTGCTGCTGGCGATCC
ATTCGTCGATGCGCAACAAGCCGCTGCCGTGCGGGCTGGTGGTGTTCGGCGAGATCGGGCTGGCCGGCGAGATCCGCCCC
ACACCGCGCGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCTCGATTGCCGTGATCCCGAAGTCGAATGCGCC
CAAGCAGCCGATCGACGGCCTGCAGGTGATTGCCGTCGAGCGCATCGAGCAGGCCATCGACCGGGTGCGCGGGCTGGAAA
CTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6G1Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

100

0.496
  radA Streptococcus pneumoniae Rx1

47.033

100

0.471
  radA Streptococcus pneumoniae D39

47.033

100

0.471
  radA Streptococcus pneumoniae R6

47.033

100

0.471
  radA Streptococcus pneumoniae TIGR4

47.033

100

0.471
  radA Streptococcus mitis SK321

47.228

99.339

0.469
  radA Streptococcus mitis NCTC 12261

47.007

99.339

0.467

Multiple sequence alignment