Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C2U39_RS02210 Genome accession   NZ_CP026222
Coordinates   435996..437435 (+) Length   479 a.a.
NCBI ID   WP_103259444.1    Uniprot ID   -
Organism   Aeromonas sp. ASNIH3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430996..442435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U39_RS02180 (C2U39_02180) mlaF 431574..432374 (-) 801 WP_039040471.1 phospholipid ABC transporter ATP-binding protein MlaF -
  C2U39_RS02185 (C2U39_02185) - 432581..433576 (+) 996 WP_042880205.1 KpsF/GutQ family sugar-phosphate isomerase -
  C2U39_RS02190 (C2U39_02190) kdsC 433576..434130 (+) 555 WP_103259443.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  C2U39_RS02195 (C2U39_02195) lptC 434127..434687 (+) 561 WP_010675874.1 LPS export ABC transporter periplasmic protein LptC -
  C2U39_RS02200 (C2U39_02200) lptA 434674..435192 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  C2U39_RS02205 (C2U39_02205) lptB 435205..435930 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  C2U39_RS02210 (C2U39_02210) rpoN/rpoN1 435996..437435 (+) 1440 WP_103259444.1 RNA polymerase factor sigma-54 Machinery gene
  C2U39_RS02215 (C2U39_02215) hpf 437456..437743 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  C2U39_RS02220 (C2U39_02220) ptsN 437746..438192 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  C2U39_RS02225 (C2U39_02225) rapZ 438233..439099 (+) 867 WP_010675869.1 RNase adapter RapZ -
  C2U39_RS02230 (C2U39_02230) npr 439120..439392 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  C2U39_RS02235 (C2U39_02235) - 439408..441312 (-) 1905 WP_103259445.1 HTH domain-containing protein -
  C2U39_RS02240 (C2U39_02240) - 441416..442156 (-) 741 WP_103259446.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53788.60 Da        Isoelectric Point: 4.3728

>NTDB_id=267881 C2U39_RS02210 WP_103259444.1 435996..437435(+) (rpoN/rpoN1) [Aeromonas sp. ASNIH3]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=267881 C2U39_RS02210 WP_103259444.1 435996..437435(+) (rpoN/rpoN1) [Aeromonas sp. ASNIH3]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGATGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACAACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGTAACAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTAAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment