Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C2U48_RS04725 Genome accession   NZ_CP026202
Coordinates   820036..820665 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ECONIH5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 815036..825665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U48_RS04710 (C2U48_04705) helD 815278..817332 (-) 2055 WP_000420536.1 DNA helicase IV -
  C2U48_RS04715 (C2U48_04710) yccF 817455..817901 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C2U48_RS04720 (C2U48_04715) yccS 817911..820073 (+) 2163 WP_000875023.1 YccS family putative transporter -
  C2U48_RS04725 (C2U48_04720) sxy/tfoX 820036..820665 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C2U48_RS04730 (C2U48_04725) sulA 820884..821393 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C2U48_RS04740 (C2U48_04735) ompA 821750..822802 (+) 1053 WP_001307702.1 porin OmpA -
  C2U48_RS04745 (C2U48_04740) matP 822877..823329 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C2U48_RS04750 (C2U48_04745) ycbZ 823515..825275 (+) 1761 WP_000156516.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=267808 C2U48_RS04725 WP_000839153.1 820036..820665(-) (sxy/tfoX) [Escherichia coli strain ECONIH5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=267808 C2U48_RS04725 WP_000839153.1 820036..820665(-) (sxy/tfoX) [Escherichia coli strain ECONIH5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment