Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C2U54_RS12765 Genome accession   NZ_CP026167
Coordinates   2605512..2606141 (+) Length   209 a.a.
NCBI ID   WP_103178958.1    Uniprot ID   A0AAD0GFN3
Organism   Leclercia sp. LSNIH1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2600512..2611141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U54_RS12745 (C2U54_12745) - 2600907..2602667 (-) 1761 WP_103178955.1 Lon protease family protein -
  C2U54_RS12750 (C2U54_12750) matP 2602854..2603309 (+) 456 WP_103178956.1 macrodomain Ter protein MatP -
  C2U54_RS12755 (C2U54_12755) ompA 2603375..2604430 (-) 1056 WP_103181059.1 porin OmpA -
  C2U54_RS12760 (C2U54_12760) sulA 2604785..2605294 (-) 510 WP_103178957.1 SOS-induced cell division inhibitor SulA -
  C2U54_RS12765 (C2U54_12765) sxy/tfoX 2605512..2606141 (+) 630 WP_103178958.1 TfoX/Sxy family DNA transformation protein Regulator
  C2U54_RS12770 (C2U54_12770) yccS 2606122..2608257 (-) 2136 WP_103178959.1 YccS family putative transporter -
  C2U54_RS12775 (C2U54_12775) - 2608276..2608722 (-) 447 WP_103178960.1 YccF domain-containing protein -
  C2U54_RS12780 (C2U54_12780) helD 2608846..2610900 (+) 2055 WP_103178961.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24184.86 Da        Isoelectric Point: 6.2706

>NTDB_id=267727 C2U54_RS12765 WP_103178958.1 2605512..2606141(+) (sxy/tfoX) [Leclercia sp. LSNIH1]
MKKLSYERIYQSAEYLSPLGEVQYRALFGGYTLAVDDTVFAMVSEGELYLRAYEESAPYCVKHASSFLTLVKRGRPVLLN
YFRVDEGLWQDRETLLQLSSFALEAARRERCERYKRERLKDLPNLTFQLEILLYEAGITNEEALRELGAEQCWLKIRALN
KHLSYKVLFALEGAITGLHVAALPEVRRQELVEWYKKLPVETPVTPAVD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=267727 C2U54_RS12765 WP_103178958.1 2605512..2606141(+) (sxy/tfoX) [Leclercia sp. LSNIH1]
ATGAAAAAGTTATCGTATGAACGGATCTATCAATCAGCAGAATACCTGTCTCCTCTGGGCGAGGTTCAGTATCGTGCCCT
GTTTGGCGGTTACACTCTGGCGGTAGATGACACGGTATTTGCCATGGTGTCGGAAGGGGAGTTATACCTGCGGGCCTATG
AAGAGAGTGCACCCTACTGCGTAAAGCATGCCTCGTCTTTCCTGACGCTGGTGAAGCGGGGGCGGCCGGTGTTGTTAAAC
TATTTTCGCGTCGATGAAGGACTCTGGCAGGATCGCGAAACGCTTCTGCAGCTCTCGTCGTTTGCGCTGGAGGCGGCGCG
GCGGGAGCGCTGCGAACGCTACAAGCGCGAGAGGCTGAAAGATTTACCCAATCTCACCTTTCAGCTGGAGATCCTGCTCT
ATGAAGCGGGCATCACCAATGAAGAGGCATTACGTGAGCTGGGAGCAGAACAGTGCTGGCTGAAGATCAGAGCGCTGAAC
AAGCACCTCAGTTACAAGGTGCTGTTTGCGCTGGAAGGGGCGATCACCGGGCTCCACGTCGCTGCGCTCCCGGAAGTCAG
ACGCCAGGAGCTGGTGGAGTGGTACAAAAAGCTGCCGGTTGAGACGCCCGTCACTCCGGCAGTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.596

94.737

0.565

Multiple sequence alignment