Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C2M15_RS15900 Genome accession   NZ_CP026164
Coordinates   3194373..3194969 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain F81     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3189373..3199969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2M15_RS15885 (C2M15_15960) helD 3189581..3191635 (-) 2055 WP_004179218.1 DNA helicase IV -
  C2M15_RS15890 (C2M15_15965) - 3191760..3192206 (+) 447 WP_021312905.1 YccF domain-containing protein -
  C2M15_RS15895 (C2M15_15970) yccS 3192224..3194359 (+) 2136 WP_002898422.1 YccS family putative transporter -
  C2M15_RS15900 (C2M15_15975) sxy/tfoX 3194373..3194969 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  C2M15_RS15910 (C2M15_15985) sulA 3195318..3195827 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  C2M15_RS15915 (C2M15_15990) ompA 3196180..3197250 (+) 1071 WP_002898408.1 porin OmpA -
  C2M15_RS15920 (C2M15_15995) matP 3197382..3197834 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  C2M15_RS15925 (C2M15_16000) - 3198020..3199777 (+) 1758 WP_004147851.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=267704 C2M15_RS15900 WP_004179217.1 3194373..3194969(-) (sxy/tfoX) [Klebsiella pneumoniae strain F81]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=267704 C2M15_RS15900 WP_004179217.1 3194373..3194969(-) (sxy/tfoX) [Klebsiella pneumoniae strain F81]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTAGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment