Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C2M13_RS17325 Genome accession   NZ_CP026162
Coordinates   3442211..3442807 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain F13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3437211..3447807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2M13_RS17310 (C2M13_17340) helD 3437419..3439473 (-) 2055 WP_004179218.1 DNA helicase IV -
  C2M13_RS17315 (C2M13_17345) - 3439598..3440044 (+) 447 WP_002898425.1 YccF domain-containing protein -
  C2M13_RS17320 (C2M13_17350) yccS 3440062..3442197 (+) 2136 WP_023316617.1 YccS family putative transporter -
  C2M13_RS17325 (C2M13_17355) sxy/tfoX 3442211..3442807 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  C2M13_RS17335 (C2M13_17365) sulA 3443156..3443665 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  C2M13_RS17340 (C2M13_17370) ompA 3444018..3445088 (+) 1071 WP_002898408.1 porin OmpA -
  C2M13_RS17345 (C2M13_17375) matP 3445220..3445672 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  C2M13_RS17350 (C2M13_17380) - 3445858..3447615 (+) 1758 WP_065803627.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=267681 C2M13_RS17325 WP_004179217.1 3442211..3442807(-) (sxy/tfoX) [Klebsiella pneumoniae strain F13]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=267681 C2M13_RS17325 WP_004179217.1 3442211..3442807(-) (sxy/tfoX) [Klebsiella pneumoniae strain F13]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment