Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LWE_RS07120 Genome accession   NC_008555
Coordinates   1402958..1404205 (+) Length   415 a.a.
NCBI ID   WP_011702209.1    Uniprot ID   A0AIJ9
Organism   Listeria welshimeri serovar 6b str. SLCC5334     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1397958..1409205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWE_RS07100 (lwe1409) yfmH 1399088..1400374 (+) 1287 WP_011702205.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LWE_RS07105 (lwe1410) ymfI 1400475..1401206 (+) 732 WP_011702206.1 elongation factor P 5-aminopentanone reductase -
  LWE_RS07110 (lwe1411) - 1401256..1402221 (+) 966 WP_011702207.1 helix-turn-helix domain-containing protein -
  LWE_RS07115 (lwe1412) pgsA 1402312..1402890 (+) 579 WP_011702208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LWE_RS07120 (lwe1413) cinA 1402958..1404205 (+) 1248 WP_011702209.1 competence/damage-inducible protein A Machinery gene
  LWE_RS07125 (lwe1414) recA 1404476..1405522 (+) 1047 WP_011702210.1 recombinase RecA Machinery gene
  LWE_RS07130 (lwe1415) rny 1405825..1407387 (+) 1563 WP_011702211.1 ribonuclease Y -
  LWE_RS07135 (lwe1416) - 1407503..1408000 (+) 498 WP_011702212.1 GNAT family N-acetyltransferase -
  LWE_RS07140 (lwe1417) - 1408005..1408808 (+) 804 WP_011702213.1 TIGR00282 family metallophosphoesterase -
  LWE_RS07145 (lwe1418) - 1408825..1409187 (+) 363 WP_011702214.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45829.26 Da        Isoelectric Point: 5.0250

>NTDB_id=26768 LWE_RS07120 WP_011702209.1 1402958..1404205(+) (cinA) [Listeria welshimeri serovar 6b str. SLCC5334]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPERLKEVIKIAENRSDILIFTGGLGPTEDDITKQ
ILADHLNKRLVEDEFHMNKITEYFTSRSRKMTENNKLQAVIIEDSVVLNNDYGFAAGMYLKANKHTYILLPGPPSEMKPM
FTSYANPLLVSENGEKIILESKIMRFFGIGESQLAADLNDLILNQVNPTLATYAGDNEVVVRITATASTKEKAAALVKDM
EEEILRRDGTFLYGYGEVSLPEHVTAMLLERKMTIAAAESFTAGLFQAEIARFPGISSIFKGGMVTYSEEVKQSMLQVPA
EVIEEHGVVSSECAKVMAENVRRLCDTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGNESEAFQYVYGRDRNHNRRRAV
KQGFQLIKHFLETNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=26768 LWE_RS07120 WP_011702209.1 1402958..1404205(+) (cinA) [Listeria welshimeri serovar 6b str. SLCC5334]
ATGGCAAGTGCAGAGATTATTGCAGTGGGAACAGAATTATTACTAGGACAAATCGTGAACTCTAATGCAGCATTTATTTC
ACAAGAATTAGCTGCTGATGGGATTTACGTTTATCATCACACCGTTGTTGGTGATAATCCTGAACGTTTAAAAGAAGTAA
TAAAAATTGCAGAAAATCGTAGTGATATTTTAATATTTACAGGTGGACTTGGACCAACAGAAGATGATATTACAAAACAA
ATCTTAGCTGATCATTTAAACAAAAGGTTAGTAGAAGACGAGTTTCATATGAATAAAATTACGGAATATTTCACATCAAG
AAGTAGAAAAATGACGGAAAATAACAAATTACAAGCCGTTATTATTGAGGATTCAGTTGTACTAAATAACGACTATGGCT
TCGCAGCTGGTATGTATTTAAAAGCAAATAAGCATACATATATTTTATTGCCTGGTCCCCCGTCTGAAATGAAGCCAATG
TTTACTAGCTATGCTAATCCGCTTCTTGTAAGTGAAAATGGCGAAAAAATTATTTTAGAATCTAAAATAATGCGATTTTT
CGGTATAGGTGAGTCTCAATTGGCTGCAGATTTAAATGATTTAATTCTTAATCAAGTAAATCCAACACTTGCAACATATG
CAGGCGACAATGAGGTTGTAGTTCGTATCACTGCTACAGCTAGTACAAAAGAAAAAGCAGCTGCATTAGTAAAGGATATG
GAAGAAGAGATTTTACGCCGTGATGGTACTTTCTTATACGGCTATGGAGAAGTTTCCTTGCCAGAACATGTAACGGCAAT
GTTATTAGAAAGAAAAATGACGATAGCTGCTGCTGAAAGTTTTACAGCTGGATTATTCCAAGCTGAAATTGCTCGTTTTC
CTGGTATATCAAGTATATTTAAAGGCGGAATGGTAACTTATAGTGAAGAAGTTAAGCAATCAATGTTGCAAGTCCCAGCT
GAAGTTATAGAAGAGCATGGTGTTGTAAGTTCGGAATGTGCCAAAGTAATGGCGGAAAATGTAAGACGCCTTTGTGACAC
GGATATTGGTATTAGTTTTACTGGTGTAGCTGGTCCAGATAGTCTGGAAGGTCACCCAGCAGGCACAATTTGGATTGGCT
TAAGTGTCAAAGGGAATGAATCTGAAGCATTTCAGTATGTGTATGGTCGTGATAGAAACCATAATCGACGTAGAGCAGTA
AAACAAGGATTTCAACTAATTAAGCATTTTTTAGAAACGAATAAGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AIJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.597

100

0.511
  cinA Streptococcus pneumoniae Rx1

49.881

100

0.504
  cinA Streptococcus pneumoniae R6

49.881

100

0.504
  cinA Streptococcus mitis SK321

50

100

0.504
  cinA Streptococcus pneumoniae D39

49.642

100

0.501
  cinA Streptococcus mutans UA159

49.519

100

0.496
  cinA Streptococcus mitis NCTC 12261

49.282

100

0.496
  cinA Bacillus subtilis subsp. subtilis str. 168

49.389

98.554

0.487
  cinA Streptococcus suis isolate S10

39.078

99.277

0.388

Multiple sequence alignment