Detailed information    

insolico Bioinformatically predicted

Overview

Name   lqsT   Type   Regulator
Locus tag   LPC_RS14605 Genome accession   NC_009494
Coordinates   3260957..3261304 (-) Length   115 a.a.
NCBI ID   WP_011947638.1    Uniprot ID   -
Organism   Legionella pneumophila str. Corby     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3255957..3266304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS14580 (LPC_0404) - 3256562..3257053 (-) 492 WP_011947632.1 disulfide bond formation protein B -
  LPC_RS14585 (LPC_0403) - 3257050..3257478 (-) 429 WP_011947633.1 c-type cytochrome -
  LPC_RS14590 (LPC_0402) cqsA 3257667..3258917 (+) 1251 WP_011947634.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  LPC_RS14595 (LPC_0401) - 3258999..3260024 (-) 1026 WP_011947635.1 response regulator -
  LPC_RS14600 (LPC_0399) - 3260306..3260869 (+) 564 WP_011947637.1 HdeD family acid-resistance protein -
  LPC_RS14605 (LPC_0398) lqsT 3260957..3261304 (-) 348 WP_011947638.1 ATP-binding protein Regulator
  LPC_RS14610 - 3261431..3262252 (+) 822 WP_228370635.1 IS982 family transposase -
  LPC_RS14615 (LPC_0396) - 3262268..3263272 (-) 1005 WP_011947639.1 hypothetical protein -
  LPC_RS14620 (LPC_0395) hemC 3263662..3264591 (+) 930 WP_041931984.1 hydroxymethylbilane synthase -
  LPC_RS14625 (LPC_0394) - 3264588..3265340 (+) 753 WP_011947641.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 13258.46 Da        Isoelectric Point: 8.9532

>NTDB_id=26757 LPC_RS14605 WP_011947638.1 3260957..3261304(-) (lqsT) [Legionella pneumophila str. Corby]
MLPFLSLFFRQLYRIHVNLIKNALYVIAMAQRGEINIWTESGDKYHYLYFKDTAKGMSKQQLNRLFNHFYTTTFMGTGIG
LSFCKLVMNAFGGDIVCESKEGEYTLFILSFPGSV

Nucleotide


Download         Length: 348 bp        

>NTDB_id=26757 LPC_RS14605 WP_011947638.1 3260957..3261304(-) (lqsT) [Legionella pneumophila str. Corby]
ATGTTACCATTCTTAAGTTTGTTTTTTAGACAGTTATATCGAATTCACGTTAATTTAATAAAAAATGCGCTTTATGTTAT
CGCAATGGCCCAGCGTGGGGAGATTAATATTTGGACTGAATCTGGCGATAAGTATCATTATTTGTATTTTAAAGACACAG
CAAAAGGGATGAGCAAACAACAATTAAATCGATTATTTAATCATTTCTATACTACTACCTTTATGGGAACAGGCATTGGT
TTATCATTTTGTAAATTGGTTATGAATGCGTTTGGTGGTGATATTGTTTGTGAGTCTAAAGAGGGCGAATACACTTTATT
TATACTGAGTTTTCCAGGCTCGGTTTAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(11-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

45.918

85.217

0.391

Multiple sequence alignment