Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   DZS39_RS04050 Genome accession   NZ_CP031628
Coordinates   804233..805021 (-) Length   262 a.a.
NCBI ID   WP_021340822.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS28330     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 799233..810021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZS39_RS04035 (DZS39_04035) - 801727..802347 (-) 621 WP_002989605.1 DUF3862 domain-containing protein -
  DZS39_RS04040 (DZS39_04040) - 802710..803798 (-) 1089 WP_011054595.1 site-specific integrase -
  DZS39_RS04045 (DZS39_04045) - 803918..804223 (-) 306 WP_011106738.1 membrane protein -
  DZS39_RS04050 (DZS39_04050) irvR 804233..805021 (-) 789 WP_021340822.1 S24 family peptidase Regulator
  DZS39_RS09365 - 805196..805342 (+) 147 WP_021340823.1 hypothetical protein -
  DZS39_RS04055 (DZS39_04055) - 805339..805821 (-) 483 WP_021340824.1 hypothetical protein -
  DZS39_RS04060 (DZS39_04060) - 805895..806134 (+) 240 WP_021340169.1 helix-turn-helix transcriptional regulator -
  DZS39_RS04065 (DZS39_04065) - 806146..806409 (+) 264 WP_029714276.1 hypothetical protein -
  DZS39_RS04070 (DZS39_04070) - 806446..806742 (+) 297 WP_011054584.1 MerR family transcriptional regulator -
  DZS39_RS09370 - 806739..806876 (+) 138 WP_165357622.1 hypothetical protein -
  DZS39_RS04075 (DZS39_04075) - 806892..807206 (+) 315 WP_021340847.1 helix-turn-helix transcriptional regulator -
  DZS39_RS04080 (DZS39_04080) - 807435..807917 (+) 483 WP_021340846.1 siphovirus Gp157 family protein -
  DZS39_RS04085 (DZS39_04085) - 807918..808598 (+) 681 WP_002995975.1 AAA family ATPase -
  DZS39_RS04090 (DZS39_04090) - 808700..809929 (+) 1230 WP_021340851.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29992.22 Da        Isoelectric Point: 9.0535

>NTDB_id=267554 DZS39_RS04050 WP_021340822.1 804233..805021(-) (irvR) [Streptococcus pyogenes strain MGAS28330]
MARGRGKLTPQDEEYKKIISAKINSLLLENNLKQGHLADALEIPRSSFNEYVKGNSLPNPGNVQKIADYFGLMKSDIDPR
FAPRKKNHELKIPTSPLVKKITTTVVELKVPRKQKVLDFATEQLKEQKNKITSIEKKLYEYKVYEKLSAGTGYGYFGDGN
YDTVFYDEELDYDFASWVFGDSMEPTYLNGEVVLIKQTGFDYEGGIYAVEWDGQTYIKKVYREKGGLRLVSLNKKYNDKF
APFSEGPRIIGEIVGNFMPKEY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=267554 DZS39_RS04050 WP_021340822.1 804233..805021(-) (irvR) [Streptococcus pyogenes strain MGAS28330]
ATGGCAAGAGGACGAGGGAAATTAACACCTCAAGACGAGGAATACAAAAAGATAATTTCTGCTAAAATTAACAGTTTATT
GCTAGAAAACAATTTAAAACAAGGACATTTAGCTGATGCATTGGAAATTCCACGAAGTAGTTTTAATGAATATGTCAAAG
GAAATTCCTTACCTAATCCTGGTAACGTTCAAAAGATAGCTGATTATTTCGGGTTAATGAAGTCTGATATAGATCCTAGA
TTTGCACCTCGTAAGAAAAATCACGAACTCAAAATCCCTACTTCTCCACTCGTCAAAAAAATAACCACAACAGTTGTAGA
ATTAAAGGTTCCTCGTAAACAAAAAGTTTTAGACTTTGCAACAGAACAATTGAAAGAGCAAAAAAACAAAATTACTTCGA
TAGAGAAAAAACTATATGAATACAAAGTCTATGAGAAACTTTCCGCAGGTACAGGTTATGGATATTTTGGTGATGGGAAC
TATGATACTGTTTTTTACGACGAAGAATTAGATTACGATTTTGCCTCTTGGGTTTTTGGTGATTCTATGGAACCAACTTA
TCTGAATGGTGAGGTTGTGCTTATAAAACAAACTGGCTTTGATTATGAAGGTGGCATCTATGCCGTAGAGTGGGACGGAC
AAACCTATATTAAGAAAGTTTACAGAGAAAAGGGTGGCTTGCGCCTTGTGTCCTTAAATAAAAAATACAATGACAAGTTT
GCTCCTTTTAGTGAAGGCCCTCGTATAATAGGGGAAATTGTCGGTAACTTTATGCCTAAAGAGTACTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(168-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

38.158

100

0.443