Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   C0971_RS12920 Genome accession   NZ_CP026143
Coordinates   2545972..2548386 (-) Length   804 a.a.
NCBI ID   WP_248891927.1    Uniprot ID   -
Organism   Bacillus methanolicus strain DFS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2540972..2553386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS12900 (C0971_12970) - 2543689..2544777 (-) 1089 WP_248891925.1 AI-2E family transporter -
  C0971_RS12905 (C0971_12975) - 2544968..2545102 (-) 135 WP_004435937.1 YrzQ family protein -
  C0971_RS12910 (C0971_12980) - 2545133..2545324 (-) 192 WP_004435939.1 hypothetical protein -
  C0971_RS12915 (C0971_12985) - 2545336..2545812 (-) 477 WP_248891926.1 PRC-barrel domain-containing protein -
  C0971_RS12920 (C0971_12990) recD2 2545972..2548386 (-) 2415 WP_248891927.1 ATP-dependent RecD-like DNA helicase Machinery gene
  C0971_RS12925 (C0971_12995) - 2548419..2549084 (-) 666 WP_248891928.1 tetratricopeptide repeat protein -
  C0971_RS12930 (C0971_13000) mnmA 2549284..2550399 (-) 1116 WP_004435946.1 tRNA 2-thiouridine(34) synthase MnmA -
  C0971_RS12935 (C0971_13005) - 2550430..2551575 (-) 1146 WP_004435949.1 cysteine desulfurase family protein -
  C0971_RS12940 (C0971_13010) - 2551602..2552021 (-) 420 WP_248891929.1 Rrf2 family transcriptional regulator -
  C0971_RS12945 (C0971_13015) - 2552018..2552710 (-) 693 WP_004435954.1 YitT family protein -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 91221.22 Da        Isoelectric Point: 4.7685

>NTDB_id=267527 C0971_RS12920 WP_248891927.1 2545972..2548386(-) (recD2) [Bacillus methanolicus strain DFS2]
MAEKQSTLNLFADDQKYIKGKHLVTIFHNDQNLYTVLRVRVEETNENYEEKEAVITGYFPRLHEQETYTFFGQMKEHPKF
GLQFHANHFRKEMPQSKQGVINYLSSELFKGIGKKTAENIVATLGENAISRILNEPSLLDTVPKLPPDKAKMLYDTLMEH
QGLEQIMVALNQYGFGPQLSMRIYQVYKDETLDIIKSNPFKLVEDIEGIGFGRADELGYQLGITGNHPDRIRAACLYTLE
KESLQAGHVFLNAEDLLESVKKLLEENQPEKIDYTDISNELLKLQEEGKIIGEEKRIYLPSLYFAEKGLVTNIKRILSQT
EYENQFPESEFLLALGKLEERLGVQYAPTQKEAIQTALMSPMMILTGGPGTGKTTVIKGIVELYAELHGCSLDPKDYRKD
EPYPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGNEGFDRNEDHPLEGKLLIVDETSMVDVWLANQLFKALPEQIQV
ILVGDEDQLPSVGPGQVLKDLLQSERIPTVRLTDIYRQAEGSSIIELAHEMKNGRLPEGISEQKPDRSFIKCTTAQIAQV
VEKVVINAKKKGYSAKDIQVLAPMYRGPAGIDRLNVILQEIFNPNPDGTRKEITFGDVKYRIGDKVLQLVNQPENNVFNG
DIGEIVSIFYAKENTEKQDMVVISFEGTEVTYTRQDLNQITLAYCCSVHKAQGSEFQIVILPVVRSYYRMLRRNLIYTAI
TRSKQFLILCGEEDALRLGVERTDDQIRNTSLCEKLQEQIPTLELTENNEKDELLVSIEEILMNEDPMIGMENITPYDFM
VDEG

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=267527 C0971_RS12920 WP_248891927.1 2545972..2548386(-) (recD2) [Bacillus methanolicus strain DFS2]
ATGGCGGAAAAACAATCTACACTCAATTTGTTTGCGGACGATCAAAAATATATTAAAGGCAAACATCTTGTTACGATCTT
TCATAATGACCAAAATTTGTACACAGTATTGCGTGTACGAGTGGAAGAAACAAATGAGAATTATGAAGAGAAGGAAGCTG
TGATTACCGGTTATTTTCCCCGCCTTCATGAACAAGAAACCTATACATTTTTTGGCCAGATGAAGGAGCACCCGAAATTT
GGTCTTCAGTTCCATGCAAATCATTTTAGGAAAGAAATGCCTCAGTCTAAGCAAGGTGTCATTAATTATTTATCAAGTGA
ACTTTTTAAAGGAATTGGAAAAAAGACTGCTGAAAATATTGTTGCAACTCTTGGCGAGAATGCAATCTCAAGAATTTTAA
ATGAGCCATCATTGCTCGATACAGTACCAAAGCTTCCTCCGGATAAAGCAAAGATGCTATATGATACCCTTATGGAGCAT
CAAGGGCTAGAACAAATAATGGTTGCACTAAATCAATATGGCTTCGGACCGCAATTGTCAATGAGAATTTATCAAGTTTA
TAAGGACGAAACCCTTGATATTATTAAATCGAATCCTTTCAAGCTTGTAGAAGATATTGAAGGGATTGGTTTTGGTCGAG
CAGACGAACTCGGATATCAACTCGGCATTACAGGAAACCATCCGGACAGAATAAGAGCCGCTTGTTTATATACGCTGGAA
AAAGAGAGCTTGCAAGCAGGACATGTCTTCCTAAATGCAGAAGATTTGCTTGAAAGTGTCAAGAAGCTTCTTGAAGAAAA
CCAGCCTGAAAAAATTGATTATACAGATATTTCTAATGAACTTCTTAAGCTTCAAGAAGAGGGGAAAATTATTGGGGAAG
AAAAGCGGATTTATTTGCCTTCCCTTTATTTTGCGGAAAAAGGGCTGGTGACAAATATAAAGCGAATTTTATCGCAAACA
GAGTACGAAAACCAGTTCCCTGAATCAGAATTTCTGCTTGCACTTGGAAAACTAGAGGAAAGACTCGGTGTTCAGTATGC
CCCGACGCAAAAAGAAGCGATCCAAACCGCGCTTATGTCGCCGATGATGATTTTAACTGGAGGGCCTGGAACCGGGAAAA
CCACTGTCATAAAAGGAATTGTCGAACTATATGCCGAACTGCACGGCTGTTCATTAGACCCTAAGGACTACCGAAAGGAC
GAGCCATATCCTTTTTTGCTGGCGGCCCCAACCGGGCGCGCTGCAAAAAGGATGAGCGAATCAACGGGATTGCCGGCAGT
GACCATTCATCGCCTGCTTGGCTGGAATGGAAACGAAGGCTTTGATCGTAATGAAGATCATCCACTTGAAGGAAAATTGC
TTATTGTCGATGAAACTTCTATGGTCGATGTGTGGCTGGCAAATCAATTATTTAAGGCATTGCCTGAACAAATTCAGGTA
ATCCTGGTCGGTGATGAAGATCAATTGCCATCGGTGGGGCCGGGTCAAGTATTAAAAGATTTACTGCAATCGGAAAGAAT
TCCTACGGTCCGATTAACAGATATTTATCGCCAGGCTGAAGGGTCATCCATCATTGAACTAGCCCACGAAATGAAAAATG
GCAGGCTTCCTGAAGGAATATCGGAACAGAAGCCTGATCGTTCGTTTATAAAGTGCACTACTGCACAAATTGCCCAAGTT
GTCGAGAAGGTCGTCATAAATGCGAAGAAAAAAGGGTATTCAGCAAAGGATATTCAAGTACTCGCCCCGATGTATCGGGG
ACCGGCAGGAATTGATCGCTTAAATGTTATATTGCAGGAAATTTTCAATCCAAATCCTGACGGGACGCGAAAGGAAATCA
CTTTCGGGGATGTGAAGTACAGAATTGGCGATAAAGTTCTTCAACTCGTAAACCAGCCGGAAAATAATGTTTTTAACGGG
GATATCGGAGAAATTGTATCGATTTTTTATGCAAAAGAAAATACTGAAAAACAAGATATGGTTGTGATCTCTTTTGAAGG
GACAGAAGTTACGTATACTCGCCAGGACTTGAACCAAATAACCCTTGCCTACTGTTGTTCTGTTCATAAAGCGCAAGGAA
GCGAATTTCAAATCGTGATCCTTCCTGTCGTAAGAAGCTATTACCGAATGCTGCGCAGAAATCTTATTTATACGGCTATT
ACAAGAAGCAAACAGTTTCTTATTTTGTGCGGTGAAGAAGATGCATTGAGATTGGGTGTAGAAAGAACGGATGATCAAAT
CCGCAATACATCATTATGCGAAAAGCTTCAAGAGCAAATTCCTACTCTTGAGCTGACAGAAAATAATGAAAAAGACGAAC
TTCTTGTTTCTATTGAAGAGATATTGATGAATGAGGATCCGATGATCGGAATGGAAAATATAACACCATATGATTTTATG
GTGGATGAAGGTTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-730)

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.934

98.632

0.631

Multiple sequence alignment