Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C0971_RS11125 Genome accession   NZ_CP026143
Coordinates   2202318..2202929 (+) Length   203 a.a.
NCBI ID   WP_248891697.1    Uniprot ID   -
Organism   Bacillus methanolicus strain DFS2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2197318..2207929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS11095 (C0971_11170) - 2198600..2199073 (+) 474 WP_004435186.1 Hsp20/alpha crystallin family protein -
  C0971_RS11100 (C0971_11175) - 2199232..2199771 (-) 540 WP_004435190.1 YppG family protein -
  C0971_RS11105 (C0971_11180) - 2199970..2200179 (+) 210 WP_004435193.1 YppF family protein -
  C0971_RS11110 (C0971_11185) - 2200329..2200697 (-) 369 WP_248891694.1 YppE family protein -
  C0971_RS11115 (C0971_11190) - 2200778..2201038 (-) 261 WP_248891695.1 hypothetical protein -
  C0971_RS11120 (C0971_11195) - 2201213..2202199 (-) 987 WP_248891696.1 DUF2515 domain-containing protein -
  C0971_RS11125 (C0971_11200) recU 2202318..2202929 (+) 612 WP_248891697.1 Holliday junction resolvase RecU Machinery gene
  C0971_RS11130 (C0971_11205) - 2202973..2205909 (+) 2937 WP_248891698.1 penicillin-binding protein 1A -
  C0971_RS11135 (C0971_11210) - 2206062..2207630 (+) 1569 WP_248891699.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 24080.42 Da        Isoelectric Point: 9.4684

>NTDB_id=267520 C0971_RS11125 WP_248891697.1 2202318..2202929(+) (recU) [Bacillus methanolicus strain DFS2]
MNFHYPNGKRYIPKQNFSENIQKGKNATYSNRGMTLEEDLNETNKYYLYNNIAVIHKKPTPVQIVHVDYPKRSAAVIKEA
YFKQPSTTDYNGVYKGKYIDFEAKETRYETSFPLKNFHEHQIQHMKNVLNHGGICFVILRFSSTEEIYFLKAEHLLEFWE
RMTNGGRKSISKEEIEKFGHYVPIGFRPRIDYIKIIDYVYNLA

Nucleotide


Download         Length: 612 bp        

>NTDB_id=267520 C0971_RS11125 WP_248891697.1 2202318..2202929(+) (recU) [Bacillus methanolicus strain DFS2]
ATGAATTTTCACTATCCGAATGGAAAACGTTATATTCCGAAACAGAATTTTTCCGAAAACATACAGAAAGGAAAAAACGC
AACTTATAGCAACCGAGGAATGACGCTCGAAGAAGATCTAAATGAAACAAATAAATATTATCTATATAATAACATTGCTG
TCATTCACAAGAAGCCTACGCCAGTGCAAATTGTTCATGTTGATTACCCGAAAAGAAGCGCGGCAGTTATAAAGGAGGCT
TATTTTAAACAGCCGTCTACTACCGATTACAACGGTGTTTATAAGGGGAAATATATTGATTTTGAAGCAAAGGAAACCCG
ATATGAGACTTCCTTTCCTTTAAAAAACTTTCATGAACATCAAATTCAGCATATGAAAAATGTTTTAAACCATGGCGGAA
TTTGTTTTGTAATTCTCAGGTTTTCATCCACTGAGGAAATATATTTCCTTAAAGCTGAACATCTGCTAGAGTTTTGGGAA
AGAATGACTAATGGAGGCAGAAAGTCGATATCCAAGGAAGAGATTGAAAAATTCGGGCACTATGTACCTATTGGATTTCG
TCCCCGAATTGACTATATTAAAATAATAGATTATGTTTATAATCTTGCATGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

64.286

96.552

0.621

Multiple sequence alignment