Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C0971_RS09645 Genome accession   NZ_CP026143
Coordinates   1935353..1935655 (+) Length   100 a.a.
NCBI ID   WP_004434614.1    Uniprot ID   -
Organism   Bacillus methanolicus strain DFS2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1930353..1940655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS09620 - 1931112..1931273 (-) 162 WP_248891476.1 hypothetical protein -
  C0971_RS09625 (C0971_09735) - 1931767..1932696 (-) 930 WP_248891477.1 NAD-dependent epimerase/dehydratase family protein -
  C0971_RS09630 (C0971_09740) - 1932782..1934152 (-) 1371 WP_248891478.1 PTS ascorbate transporter subunit IIC -
  C0971_RS09635 (C0971_09745) - 1934176..1934457 (-) 282 WP_248891479.1 PTS sugar transporter subunit IIB -
  C0971_RS09640 (C0971_09750) - 1934499..1934954 (-) 456 WP_248891480.1 PTS sugar transporter subunit IIA -
  C0971_RS09645 (C0971_09755) abrB 1935353..1935655 (+) 303 WP_004434614.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  C0971_RS09650 (C0971_09760) - 1935781..1936698 (-) 918 WP_248891481.1 MBL fold metallo-hydrolase -
  C0971_RS09655 (C0971_09765) - 1936901..1938529 (-) 1629 WP_248891482.1 MDR family MFS transporter -
  C0971_RS09660 (C0971_09770) - 1938706..1939689 (-) 984 WP_248891483.1 Gfo/Idh/MocA family oxidoreductase -
  C0971_RS09665 (C0971_09775) - 1940048..1940239 (-) 192 WP_248891484.1 hypothetical protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11371.11 Da        Isoelectric Point: 5.1769

>NTDB_id=267519 C0971_RS09645 WP_004434614.1 1935353..1935655(+) (abrB) [Bacillus methanolicus strain DFS2]
MKSTGVVRKVDELGRIVIPKELRNTFDIKEKDPLEIFVEEDKIILKKYSPYRACMITGEVSDHNISLADGKIVLSPEGAQ
MLLHDLQQLLNDRQFQGTDS

Nucleotide


Download         Length: 303 bp        

>NTDB_id=267519 C0971_RS09645 WP_004434614.1 1935353..1935655(+) (abrB) [Bacillus methanolicus strain DFS2]
ATGAAATCAACCGGTGTTGTAAGGAAAGTGGACGAACTTGGACGTATTGTTATTCCGAAAGAGCTGCGCAATACTTTCGA
TATCAAAGAAAAAGACCCACTTGAGATTTTCGTAGAGGAAGACAAGATTATTTTGAAGAAGTACAGCCCATACCGGGCTT
GCATGATTACTGGGGAAGTTTCTGACCATAATATTTCTCTTGCTGATGGAAAAATTGTTTTAAGCCCTGAAGGTGCTCAA
ATGCTCCTTCATGATTTACAACAATTGCTTAATGACAGACAATTTCAAGGGACTGACTCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

61.957

92

0.57

Multiple sequence alignment