Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C0971_RS08730 Genome accession   NZ_CP026143
Coordinates   1732169..1732495 (+) Length   108 a.a.
NCBI ID   WP_248893893.1    Uniprot ID   -
Organism   Bacillus methanolicus strain DFS2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1727169..1737495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS08695 (C0971_08775) - 1727227..1728390 (-) 1164 WP_248893889.1 acyl-CoA dehydrogenase family protein -
  C0971_RS08700 (C0971_08780) - 1728656..1728859 (+) 204 WP_248893890.1 DUF1657 domain-containing protein -
  C0971_RS08705 (C0971_08785) - 1728946..1729152 (+) 207 WP_248893891.1 DUF1657 domain-containing protein -
  C0971_RS08710 (C0971_08790) - 1729171..1730040 (+) 870 WP_004434156.1 DUF421 domain-containing protein -
  C0971_RS08715 (C0971_08795) - 1730219..1730557 (-) 339 WP_004434159.1 YrdB family protein -
  C0971_RS08720 (C0971_08800) - 1730589..1731170 (-) 582 WP_248893892.1 TetR/AcrR family transcriptional regulator -
  C0971_RS08725 (C0971_08805) - 1731249..1731959 (-) 711 WP_004434167.1 MBL fold metallo-hydrolase -
  C0971_RS08730 (C0971_08810) sinR 1732169..1732495 (+) 327 WP_248893893.1 helix-turn-helix domain-containing protein Regulator
  C0971_RS08735 (C0971_08815) - 1732625..1732774 (-) 150 WP_248893894.1 anti-repressor SinI family protein -
  C0971_RS08740 (C0971_08820) - 1732818..1732991 (-) 174 Protein_1678 TasA family protein -
  C0971_RS08745 (C0971_08825) - 1733076..1733666 (-) 591 WP_248893895.1 signal peptidase I SipW -
  C0971_RS08750 (C0971_08830) - 1733681..1734283 (-) 603 WP_248893896.1 SipW-dependent-type signal peptide-containing protein -
  C0971_RS08755 (C0971_08835) - 1734952..1735425 (-) 474 WP_248893897.1 DUF6884 domain-containing protein -
  C0971_RS08760 (C0971_08840) - 1735498..1735986 (-) 489 WP_283108189.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  C0971_RS08765 (C0971_08845) - 1736096..1736392 (-) 297 Protein_1683 Ada metal-binding domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12640.59 Da        Isoelectric Point: 5.9371

>NTDB_id=267517 C0971_RS08730 WP_248893893.1 1732169..1732495(+) (sinR) [Bacillus methanolicus strain DFS2]
MIGDRVKKLRLEKQMSLSELAEQAGVAKSYLSALERNLQRNPSIQFLEKIAGVLNVPVDHLILEQPNKEDLDSEWMKIVK
EAMESGVSKEQFREFLEFYKWKMNQNKE

Nucleotide


Download         Length: 327 bp        

>NTDB_id=267517 C0971_RS08730 WP_248893893.1 1732169..1732495(+) (sinR) [Bacillus methanolicus strain DFS2]
ATGATTGGTGATCGTGTAAAAAAACTCCGCCTAGAAAAGCAAATGTCCCTCTCAGAATTGGCAGAGCAGGCCGGTGTAGC
AAAATCATATTTAAGCGCCTTAGAAAGAAATTTACAAAGAAACCCATCCATACAGTTTCTTGAAAAAATTGCAGGAGTAT
TAAACGTTCCTGTTGATCATTTGATTCTCGAACAACCTAACAAAGAGGATTTGGATTCAGAATGGATGAAAATTGTCAAA
GAAGCGATGGAATCTGGAGTTTCTAAAGAACAATTTCGCGAATTCCTTGAATTTTATAAATGGAAAATGAATCAAAATAA
AGAATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(71-98)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

62.162

100

0.639

Multiple sequence alignment