Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C0971_RS05435 Genome accession   NZ_CP026143
Coordinates   1066812..1067276 (-) Length   154 a.a.
NCBI ID   WP_003348727.1    Uniprot ID   I3DYS1
Organism   Bacillus methanolicus strain DFS2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1061812..1072276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS05410 (C0971_05455) - 1062047..1063195 (-) 1149 WP_248893301.1 aminotransferase A -
  C0971_RS05415 (C0971_05460) - 1063420..1063623 (-) 204 WP_003348722.1 hypothetical protein -
  C0971_RS05420 (C0971_05465) - 1063828..1064274 (+) 447 WP_248893303.1 RDD family protein -
  C0971_RS05425 (C0971_05470) - 1064456..1065802 (+) 1347 WP_248893306.1 MFS transporter -
  C0971_RS05430 (C0971_05475) - 1065875..1066780 (+) 906 WP_248893307.1 chemotaxis protein -
  C0971_RS05435 (C0971_05480) kre 1066812..1067276 (-) 465 WP_003348727.1 YkyB family protein Regulator
  C0971_RS05440 (C0971_05485) - 1067666..1069393 (+) 1728 WP_248893309.1 EAL domain-containing protein -
  C0971_RS05445 (C0971_05490) - 1069417..1070289 (-) 873 WP_248893312.1 metallophosphoesterase -
  C0971_RS05450 (C0971_05495) - 1070512..1071276 (-) 765 WP_248893314.1 C39 family peptidase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17579.42 Da        Isoelectric Point: 10.8985

>NTDB_id=267512 C0971_RS05435 WP_003348727.1 1066812..1067276(-) (kre) [Bacillus methanolicus strain DFS2]
MNRKNRSHPPLHSTVENLAQAIFTVNRHAKTAPNPKYLYKLKHEALKKMISEGKAKKVGLHFSQNPKLCQQQSAVLVVCG
NYSFHIPPSKNDMKLLPHLGHLNQNVRNPKSRLSLNQAKKLLQSYTGLKEINTEPNNKTRSYQKPVFKKLGESY

Nucleotide


Download         Length: 465 bp        

>NTDB_id=267512 C0971_RS05435 WP_003348727.1 1066812..1067276(-) (kre) [Bacillus methanolicus strain DFS2]
TTGAACAGGAAAAACAGAAGTCATCCTCCATTACATTCAACAGTTGAAAACCTCGCACAAGCCATTTTTACCGTAAACCG
TCATGCAAAAACTGCCCCAAACCCAAAATATTTATATAAACTCAAACATGAGGCTTTAAAAAAGATGATATCAGAAGGTA
AAGCAAAAAAAGTCGGACTCCATTTTTCACAAAACCCAAAATTGTGTCAACAGCAGTCAGCAGTCCTTGTTGTTTGCGGT
AATTATTCCTTTCATATTCCACCGTCCAAAAATGACATGAAATTACTACCCCACTTGGGACATTTAAACCAAAACGTCCG
CAACCCAAAATCCCGCCTATCTTTAAATCAGGCAAAAAAGCTATTGCAGTCTTATACGGGCTTAAAAGAAATCAATACAG
AACCGAATAATAAAACTCGCAGCTATCAAAAACCGGTCTTTAAAAAACTTGGAGAAAGTTATTGA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(15-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3DYS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.194

93.506

0.591

Multiple sequence alignment