Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LPC_RS13870 Genome accession   NC_009494
Coordinates   3100428..3101219 (-) Length   263 a.a.
NCBI ID   WP_011947515.1    Uniprot ID   -
Organism   Legionella pneumophila str. Corby     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3095428..3106219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS13860 (LPC_0557) legS1 3096580..3097737 (-) 1158 WP_011947512.1 Dot/Icm T4SS effector LegS1 -
  LPC_RS13865 (LPC_0554) dacB 3098543..3100336 (-) 1794 WP_010948289.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  LPC_RS13870 (LPC_0552) spo0J 3100428..3101219 (-) 792 WP_011947515.1 ParB/RepB/Spo0J family partition protein Regulator
  LPC_RS13875 (LPC_0551) ceg33 3101336..3101839 (-) 504 WP_011947516.1 Dot/Icm T4SS effector Ceg33 -
  LPC_RS13880 (LPC_0550) - 3102013..3102762 (-) 750 WP_011947517.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  LPC_RS13885 (LPC_0549) rsmB 3102759..3104042 (-) 1284 WP_011947518.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LPC_RS13890 (LPC_0548) fmt 3104039..3104983 (-) 945 WP_011947519.1 methionyl-tRNA formyltransferase -
  LPC_RS13895 (LPC_0547) def 3104980..3105492 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30077.29 Da        Isoelectric Point: 5.9789

>NTDB_id=26751 LPC_RS13870 WP_011947515.1 3100428..3101219(-) (spo0J) [Legionella pneumophila str. Corby]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKALSFG
HARVLVGLNPETPECFAHQIIGEEWSVRHLEQEIKFYKNKDMNSPKNPRKDRDIERLQTILAEQVGAPVQIINDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=26751 LPC_RS13870 WP_011947515.1 3100428..3101219(-) (spo0J) [Legionella pneumophila str. Corby]
ATGCAAACCCGATTTACTTATTTACCTGTCACAAGCCTGCAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCTTTGGTGGTAAGACCCATAGCAAAAGAGC
GATATGAAATTATTGCAGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATCGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCTGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGCGTTATCCTTTGGC
CATGCTCGTGTATTGGTTGGCTTAAATCCTGAAACACCAGAATGTTTTGCTCACCAGATTATTGGAGAGGAATGGTCTGT
CAGACACTTAGAGCAAGAAATTAAATTTTATAAAAATAAAGATATGAATAGCCCAAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCTTGGCTGAACAAGTGGGAGCTCCTGTACAAATTATAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGTTTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(146-195)

ParB/Sulfiredoxin domain (ParB_N)

(7-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

36.923

98.859

0.365

Multiple sequence alignment