Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LWE_RS00175 Genome accession   NC_008555
Coordinates   36149..36682 (+) Length   177 a.a.
NCBI ID   WP_011700912.1    Uniprot ID   A0A7X0T435
Organism   Listeria welshimeri serovar 6b str. SLCC5334     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 31149..41682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWE_RS00150 (lwe0031) - 31905..32780 (+) 876 WP_011700908.1 S66 peptidase family protein -
  LWE_RS00155 (lwe0032) - 33021..33359 (+) 339 WP_011700909.1 DUF4064 domain-containing protein -
  LWE_RS00160 (lwe0033) - 33550..34209 (+) 660 WP_011700910.1 DedA family protein -
  LWE_RS00165 (lwe0034) arcA 34288..35517 (+) 1230 WP_077904695.1 arginine deiminase -
  LWE_RS00170 (lwe0035) rpsF 35800..36093 (+) 294 WP_003718123.1 30S ribosomal protein S6 -
  LWE_RS00175 (lwe0036) ssbA 36149..36682 (+) 534 WP_011700912.1 single-stranded DNA-binding protein Machinery gene
  LWE_RS00180 (lwe0037) rpsR 36726..36965 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  LWE_RS00185 (lwe0038) - 37119..37733 (+) 615 WP_011700913.1 PepSY domain-containing protein -
  LWE_RS00190 (lwe0039) - 37990..38604 (+) 615 WP_011700914.1 accessory gene regulator ArgB-like protein -
  LWE_RS00195 (lwe0040) - 38588..38749 (+) 162 WP_011700915.1 cyclic lactone autoinducer peptide -
  LWE_RS00205 (lwe0041) - 38845..40141 (+) 1297 Protein_39 sensor histidine kinase -
  LWE_RS00210 (lwe0042) - 40160..40888 (+) 729 WP_011700917.1 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19288.91 Da        Isoelectric Point: 4.7306

>NTDB_id=26751 LWE_RS00175 WP_011700912.1 36149..36682(+) (ssbA) [Listeria welshimeri serovar 6b str. SLCC5334]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQGGNNNNYNNGGSNSGQAPTNNGGFGQDQQQSQNQNYQSTNNDP
FASDGKPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=26751 LWE_RS00175 WP_011700912.1 36149..36682(+) (ssbA) [Listeria welshimeri serovar 6b str. SLCC5334]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCGGCTGGCGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGTACGTTCACTAACCAACAGGGAGAGCGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTTAAGAAAGGAAGCATGGCAGGGGTTGATGGCCGCGTTCAAACTCGT
AATTACGAGGGTAACGATGGTAAACGAGTTTATGTGACAGAAATTGTAGCTGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGCGGCGGAAATAACTATCAAGGCGGAAACAATAATAATTATAATAATGGTGGAAGTAACTCCGGGCAAG
CACCTACAAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAACAATGATCCT
TTCGCTAGTGATGGTAAGCCAATCGACATTTCAGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X0T435

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.797

100

0.678
  ssb Latilactobacillus sakei subsp. sakei 23K

56.742

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.887

0.367
  ssb Vibrio cholerae strain A1552

35.135

100

0.367
  ssb Glaesserella parasuis strain SC1401

34.946

100

0.367

Multiple sequence alignment