Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C0971_RS00230 Genome accession   NZ_CP026143
Coordinates   44635..44925 (-) Length   96 a.a.
NCBI ID   WP_003347131.1    Uniprot ID   I3EC21
Organism   Bacillus methanolicus strain DFS2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39635..49925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS00195 (C0971_00195) - 39791..40231 (+) 441 WP_003347117.1 YaaR family protein -
  C0971_RS00200 (C0971_00200) holB 40245..41252 (+) 1008 WP_248892593.1 DNA polymerase III subunit delta' -
  C0971_RS00205 (C0971_00205) - 41245..42072 (+) 828 WP_003347121.1 stage 0 sporulation family protein -
  C0971_RS00210 (C0971_00210) yabA 42209..42586 (+) 378 WP_003347122.1 DNA replication initiation control protein YabA -
  C0971_RS00215 (C0971_00215) - 42663..43406 (+) 744 WP_003347125.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  C0971_RS00220 (C0971_00220) - 43393..43686 (+) 294 WP_003347127.1 GIY-YIG nuclease family protein -
  C0971_RS00225 (C0971_00225) rsmI 43658..44533 (+) 876 WP_003347129.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  C0971_RS00230 (C0971_00230) abrB 44635..44925 (-) 291 WP_003347131.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  C0971_RS00235 (C0971_00235) metG 45561..47513 (+) 1953 WP_248892594.1 methionine--tRNA ligase -
  C0971_RS00240 (C0971_00240) - 47655..48422 (+) 768 WP_003347135.1 TatD family hydrolase -
  C0971_RS00245 (C0971_00245) - 48694..49875 (+) 1182 WP_248892595.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10830.56 Da        Isoelectric Point: 5.2271

>NTDB_id=267497 C0971_RS00230 WP_003347131.1 44635..44925(-) (abrB) [Bacillus methanolicus strain DFS2]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDDRIILKKYKPNMTCHVTGEVSDENISLAGGKLILSREGAE
LLLKEIQENFQFTESK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=267497 C0971_RS00230 WP_003347131.1 44635..44925(-) (abrB) [Bacillus methanolicus strain DFS2]
ATGAAATCTACTGGAATTGTTCGTAAAGTTGATGAATTAGGCCGTGTGGTTATTCCAATCGAATTAAGACGTACACTTGG
AATTGCTGAAAAAGATGCTCTAGAAATTTATGTTGATGATGATCGTATTATCCTAAAAAAATACAAACCAAATATGACTT
GCCATGTAACTGGCGAAGTTTCTGATGAAAACATTTCTTTAGCCGGCGGAAAATTAATTCTTAGCCGCGAAGGTGCAGAG
CTGCTTCTTAAAGAAATTCAGGAAAATTTCCAATTTACAGAAAGCAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3EC21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

83.516

94.792

0.792

Multiple sequence alignment