Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LPC_RS13335 Genome accession   NC_009494
Coordinates   2979870..2980553 (+) Length   227 a.a.
NCBI ID   WP_011947404.1    Uniprot ID   A5IEW9
Organism   Legionella pneumophila str. Corby     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2974870..2985553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS13315 (LPC_1993) - 2974884..2976617 (+) 1734 WP_011947400.1 tetratricopeptide repeat protein -
  LPC_RS13320 (LPC_1992) - 2976723..2978111 (-) 1389 WP_011947401.1 phosphomannomutase/phosphoglucomutase -
  LPC_RS13325 (LPC_1991) dut 2978112..2978570 (-) 459 WP_011947402.1 dUTP diphosphatase -
  LPC_RS13330 (LPC_1990) coaBC 2978597..2979793 (-) 1197 WP_041931979.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  LPC_RS13335 (LPC_1989) radC 2979870..2980553 (+) 684 WP_011947404.1 RadC family protein Machinery gene
  LPC_RS13340 (LPC_1988) - 2980589..2980825 (+) 237 WP_011947405.1 hypothetical protein -
  LPC_RS13345 (LPC_1987) lepB 2980905..2984789 (+) 3885 WP_011947406.1 Dot/Icm T4SS GTPase-activating effector LepB -
  LPC_RS13350 (LPC_1986) thpR 2984913..2985476 (-) 564 WP_013101836.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25706.30 Da        Isoelectric Point: 6.5825

>NTDB_id=26749 LPC_RS13335 WP_011947404.1 2979870..2980553(+) (radC) [Legionella pneumophila str. Corby]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIQLSNTQQTYAFLKKRLRDYKNETFAALFLDSQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDFAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=26749 LPC_RS13335 WP_011947404.1 2979870..2980553(+) (radC) [Legionella pneumophila str. Corby]
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAACTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCAGTTATCTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAGCCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATTT
TGCCATTACAGAACGCATTCGAGATGCTCTGGACCTGGTAGACGCCAGGTTACTGGATCACATTGTCATTGGAGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A5IEW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.458

94.273

0.41