Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SFUM_RS08820 Genome accession   NC_008554
Coordinates   2087190..2088551 (-) Length   453 a.a.
NCBI ID   WP_011698564.1    Uniprot ID   A0LIZ2
Organism   Syntrophobacter fumaroxidans MPOB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2082190..2093551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFUM_RS08800 (Sfum_1703) sucC 2082762..2083928 (-) 1167 WP_011698560.1 ADP-forming succinate--CoA ligase subunit beta -
  SFUM_RS08810 (Sfum_1705) gatB 2084492..2085922 (+) 1431 WP_011698562.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  SFUM_RS08815 (Sfum_1706) mtnA 2086096..2087145 (+) 1050 WP_011698563.1 S-methyl-5-thioribose-1-phosphate isomerase -
  SFUM_RS08820 (Sfum_1707) radA 2087190..2088551 (-) 1362 WP_011698564.1 DNA repair protein RadA Machinery gene
  SFUM_RS08825 (Sfum_1708) trxA 2088777..2089109 (+) 333 WP_011698565.1 thioredoxin -
  SFUM_RS08830 (Sfum_1709) trxB 2089205..2090140 (+) 936 WP_011698566.1 thioredoxin-disulfide reductase -
  SFUM_RS21660 (Sfum_1710) - 2090169..2090945 (+) 777 WP_011698567.1 outer membrane protein assembly factor BamD -
  SFUM_RS08840 (Sfum_1711) rho 2091356..2092603 (+) 1248 WP_041442153.1 transcription termination factor Rho -
  SFUM_RS08845 (Sfum_1712) rpmE 2092875..2093105 (+) 231 WP_011698569.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48787.34 Da        Isoelectric Point: 6.9496

>NTDB_id=26744 SFUM_RS08820 WP_011698564.1 2087190..2088551(-) (radA) [Syntrophobacter fumaroxidans MPOB]
MGGLKTIYRCQQCGYVSPKWLGRCPECRSWQSLVEEVTHKASGRLEPHGQAARPLPLAEIPMESEARFTTGIGEWDRVLG
GGLVSGSLILLAGDPGIGKSTLLLQALALMSQKKKVLYVSGEESPQQLKLRAARLRIESGGLLIFSETSLEAVLDVIDHS
HPQILAVDSIQTMHTMGLEVAPGSISQVRECALRLMRAAKDGNISIFLVGHVTKEGSIAGPRALEHLVDTVLYLEGDRTH
TFRLLRAVKNRYGSTNEVGVFEMKEAGLEEVPNPSQFLLAERPTGVSGSVVVCSMEGTRPLLVELQALVGATGWTQPRRT
SMGIDTNRVSLLLAVLEKKLGFNFGQQDVFVNVAGGVRLQEPAADLALTTALMSSYLDRPLPQELAVWGEVGLAGEVRGV
GHGAARAMEAAKLGFTRCLMPGSNAERLSPDAGVVYMGARSLQDVLRMLFDGT

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=26744 SFUM_RS08820 WP_011698564.1 2087190..2088551(-) (radA) [Syntrophobacter fumaroxidans MPOB]
ATGGGGGGTCTCAAGACGATCTATCGATGTCAGCAGTGCGGCTACGTGAGCCCGAAATGGCTGGGCCGTTGTCCCGAGTG
CCGGAGTTGGCAGAGTCTGGTGGAGGAGGTCACGCATAAGGCTTCAGGGCGGTTGGAGCCCCATGGGCAAGCGGCTCGTC
CCCTGCCCCTGGCGGAAATTCCGATGGAGTCGGAAGCACGGTTCACCACAGGCATCGGTGAGTGGGACCGAGTGCTGGGA
GGAGGGCTGGTCAGCGGGTCCCTCATTCTGCTGGCAGGCGACCCCGGCATCGGGAAATCCACGCTCCTGCTCCAGGCGCT
TGCCCTCATGTCGCAAAAGAAAAAGGTCCTCTACGTCTCCGGTGAAGAGAGCCCGCAACAACTGAAACTGCGGGCCGCAC
GGCTGAGAATCGAATCCGGAGGACTGCTCATCTTTTCCGAAACCTCCCTGGAGGCCGTCCTTGACGTCATCGACCACTCG
CATCCGCAGATCCTGGCGGTGGATTCCATTCAGACCATGCACACCATGGGGCTCGAGGTCGCTCCGGGTTCCATAAGCCA
GGTCCGGGAATGTGCGTTGCGGCTGATGCGCGCCGCAAAAGACGGCAACATCAGTATCTTCCTGGTCGGCCACGTCACCA
AGGAAGGCTCCATCGCCGGTCCCCGAGCCCTCGAACACCTTGTGGACACCGTTCTCTACCTTGAAGGGGATCGCACGCAT
ACGTTCCGGCTGTTGCGAGCGGTCAAGAACCGATATGGATCAACCAACGAGGTCGGTGTGTTCGAAATGAAGGAGGCGGG
ATTGGAGGAAGTGCCGAATCCTTCTCAATTCCTTCTTGCGGAACGGCCCACGGGTGTATCCGGATCGGTGGTGGTGTGTT
CGATGGAGGGCACCCGCCCCTTGCTGGTGGAGCTGCAGGCGCTGGTCGGCGCCACCGGATGGACCCAGCCCCGGCGGACC
AGCATGGGAATCGATACCAACCGGGTTTCCCTCCTGCTGGCGGTGCTCGAAAAGAAGCTCGGGTTCAATTTCGGTCAACA
GGATGTTTTCGTGAACGTGGCGGGAGGTGTCCGCCTGCAGGAACCGGCCGCCGACCTCGCCCTGACGACGGCGCTGATGA
GCTCTTACCTCGACCGGCCGTTGCCCCAGGAACTGGCGGTGTGGGGCGAGGTCGGACTGGCGGGGGAAGTGCGCGGCGTG
GGGCATGGCGCGGCCCGGGCCATGGAAGCGGCAAAACTCGGGTTTACGCGCTGTCTCATGCCGGGCAGCAATGCCGAACG
GCTTTCACCGGATGCGGGTGTCGTCTACATGGGCGCTCGTTCGCTACAGGACGTTCTGCGGATGCTGTTTGACGGCACAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-424)

AAA domain (AAA_25)

(77-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0LIZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.965

100

0.525
  radA Streptococcus mitis NCTC 12261

51.435

100

0.514
  radA Streptococcus mitis SK321

51.435

100

0.514
  radA Streptococcus pneumoniae Rx1

51.214

100

0.512
  radA Streptococcus pneumoniae D39

51.214

100

0.512
  radA Streptococcus pneumoniae R6

51.214

100

0.512
  radA Streptococcus pneumoniae TIGR4

51.214

100

0.512

Multiple sequence alignment