Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2U31_RS24545 Genome accession   NZ_CP026124
Coordinates   5370069..5371430 (-) Length   453 a.a.
NCBI ID   WP_103275184.1    Uniprot ID   A0A2I8DQ65
Organism   Achromobacter sp. AONIH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5365069..5376430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U31_RS24525 (C2U31_24525) - 5366385..5367158 (-) 774 WP_158658450.1 GntR family transcriptional regulator -
  C2U31_RS24530 (C2U31_24530) - 5367535..5368491 (+) 957 WP_103276558.1 2-hydroxyacid dehydrogenase -
  C2U31_RS24535 (C2U31_24535) - 5368800..5369066 (-) 267 WP_103275182.1 hypothetical protein -
  C2U31_RS24540 (C2U31_24540) - 5369232..5370059 (-) 828 WP_103275183.1 sulfite exporter TauE/SafE family protein -
  C2U31_RS24545 (C2U31_24545) radA 5370069..5371430 (-) 1362 WP_103275184.1 DNA repair protein RadA Machinery gene
  C2U31_RS30650 - 5371533..5371778 (+) 246 WP_158658451.1 hypothetical protein -
  C2U31_RS24550 (C2U31_24550) - 5371866..5372495 (+) 630 WP_103275185.1 hypothetical protein -
  C2U31_RS24555 (C2U31_24555) hpaR 5372636..5373076 (+) 441 WP_103275186.1 homoprotocatechuate degradation operon regulator HpaR -
  C2U31_RS24560 (C2U31_24560) hpaD 5373107..5373958 (-) 852 WP_103275187.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  C2U31_RS24565 (C2U31_24565) hpaE 5374010..5375476 (-) 1467 WP_103275188.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48132.18 Da        Isoelectric Point: 6.9551

>NTDB_id=267353 C2U31_RS24545 WP_103275184.1 5370069..5371430(-) (radA) [Achromobacter sp. AONIH1]
MAKNRTVYVCAECGGTTPKWQGKCPHCNAWNTLEETVESSAPSAAAHRYAPLASSSPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSETTPVLYVTGEESAEQVALRARRLGLATGNVNLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSYRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=267353 C2U31_RS24545 WP_103275184.1 5370069..5371430(-) (radA) [Achromobacter sp. AONIH1]
ATGGCAAAGAATCGAACCGTCTACGTTTGCGCCGAATGCGGCGGCACCACCCCGAAGTGGCAGGGCAAATGCCCGCACTG
CAATGCCTGGAACACGCTGGAGGAAACCGTGGAGTCGTCCGCCCCGTCGGCGGCGGCCCACCGGTATGCGCCGCTGGCCA
GCAGCAGTCCGGTGCGCAGCCTGTCCGAGATCGAGGCCCGCGAGACGCCGCGCCAGCCTACTGGCCTCGATGAATTCGAC
CGTGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCT
GCTGCAGGCGCTGGCGTCCCTGTCCGAGACCACCCCGGTGCTGTACGTTACCGGCGAGGAATCGGCCGAGCAGGTCGCGC
TGCGCGCCCGCCGGCTGGGCCTGGCCACCGGCAACGTCAACCTGTTGGCCGAGATCCGGCTGGAGGCGATCCAGGCCGCC
GTGTCCGAGCAGAAGCCGACGGTGGCCGTGATCGACTCGATCCAGACGCTGTACAGCGGCGAGCTGACCGCCGCGCCCGG
TTCGGTGTCGCAGGTGCGCGAATGCGCCGCGCAGCTGACGCGGCTGGCCAAGCAGACCGGCATCGCCATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGGCCGCGCGTGCTGGAGCACATCGTCGACACGGTGCTGTACTTCGAGGGC
GACACGCATTCCTCGTACCGGCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCCAT
GACCGACCGTGGCCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGCAGGTCGCCGGCTCCT
GCGTGATGGCCACGCAGGAAGGCACGCGGCCGCTGCTGGTCGAGATCCAGGCGCTGGTGGATAGCTCGCACGCGCCCAAT
CCGCGGCGCCTGACCGTGGGCCTGGAAGGCAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGGCACGCGGGCGTGTC
CACCTTCGACCAGGACGTGTTCGTCAACGCCGTCGGCGGCGTGCGCATCACCGAGCCGGCGGCCGACCTTCCGGTGCTGC
TCGCCATCATGTCGTCGCTGCGCGACCGGCCGCTGCCGCGCGGACTGATCGCGTTCGGCGAAGTCGGCCTGGCCGGCGAA
ATCCGGCCCGCGCCGCGCGGACAAGAGCGTTTGCGCGAGGCCGCCAAACTGGGCTTCAGCGTGGCGCTGATCCCCAAGGC
CAACGCGCCGCGCCAGCCCATCGAGGGCCTGGAGATCTGGGCGGTCGACCGGCTCGACGCCGCGCTGGACAAGTTGCGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I8DQ65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

100

0.497
  radA Streptococcus mitis NCTC 12261

45.916

100

0.459
  radA Streptococcus pneumoniae D39

48.122

94.04

0.453
  radA Streptococcus pneumoniae TIGR4

48.122

94.04

0.453
  radA Streptococcus mitis SK321

48.122

94.04

0.453
  radA Streptococcus pneumoniae R6

48.122

94.04

0.453
  radA Streptococcus pneumoniae Rx1

48.122

94.04

0.453

Multiple sequence alignment