Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HLI_RS19220 Genome accession   NZ_CP026118
Coordinates   3878758..3880482 (+) Length   574 a.a.
NCBI ID   WP_128526509.1    Uniprot ID   -
Organism   Halobacillus litoralis strain ERB 031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3873758..3885482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLI_RS19200 (HLI_19485) - 3874887..3875486 (+) 600 WP_128526505.1 hypothetical protein -
  HLI_RS19205 (HLI_19490) dxs 3875505..3877397 (+) 1893 WP_128526506.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HLI_RS19210 (HLI_19495) - 3877403..3878227 (+) 825 WP_128526507.1 TlyA family RNA methyltransferase -
  HLI_RS19215 (HLI_19500) argR 3878291..3878740 (+) 450 WP_128526508.1 transcriptional regulator ArgR -
  HLI_RS19220 (HLI_19505) recN 3878758..3880482 (+) 1725 WP_128526509.1 DNA repair protein RecN Machinery gene
  HLI_RS19225 (HLI_19510) spoIVB 3880825..3882072 (+) 1248 WP_277750297.1 SpoIVB peptidase -
  HLI_RS19230 (HLI_19515) spo0A 3882328..3883107 (+) 780 WP_128526511.1 sporulation transcription factor Spo0A -
  HLI_RS19235 (HLI_19520) - 3883173..3883445 (-) 273 WP_128526512.1 hypothetical protein -
  HLI_RS19240 (HLI_19525) - 3883651..3885003 (+) 1353 WP_128526513.1 aspartate kinase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 65078.61 Da        Isoelectric Point: 4.7169

>NTDB_id=267302 HLI_RS19220 WP_128526509.1 3878758..3880482(+) (recN) [Halobacillus litoralis strain ERB 031]
MLTELSIRDFAIIDRISITFKEGLTVLTGETGAGKSIIIDAIQLLAGGRGSVEFVRHGTKKAEIEGLFTIDPDHPIYKTG
AEFGVDIDEDGMVVLQRTITHQGKSICRVNGKLVTLGIMKEFGRTLIDIHSQHETQSLMDPERHIELLDVFSSSDLKPSL
EEYRRVYDKYRSLVKRYKELSENEQEMAQRLDLLEFQLRELQEAELQPLEDEQLEEERSKLMNYEKIYQGIHDAYYSLYG
EQRGLDWLSHAMTSLESTADVDEQLAKLSEELSNSYYLIEEMTFQLSNQMAELEFDPERLNSIESRLDELNRLKKKYGAK
VDDMLQYASKIEEEIDEIRNKDSHLNKMENEIHELAQDAVLEAKTMHDIRTHTAATLSDYIHEELRGLYLEKASFAVDIQ
MKEGRSSDPALDGKPVQLLPNGFDIVKFLITTNPGEPLKELHKVASGGEMSRIMLALKRIFSRHQGVTSVIFDEVDTGVS
GRVAQAIAEKIHGISEGSQVLCISHLPQVAAMADTHVRIEKRVDNERTQTAAAELNDEEKADEISRMITGAELTETTVEH
AKELLVMAGKHKNK

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=267302 HLI_RS19220 WP_128526509.1 3878758..3880482(+) (recN) [Halobacillus litoralis strain ERB 031]
ATGCTGACAGAATTGTCTATTCGTGATTTTGCAATTATTGATCGAATTTCAATCACGTTCAAAGAAGGGTTGACCGTCTT
GACAGGGGAGACCGGTGCAGGAAAGTCGATAATCATCGATGCAATCCAATTGCTGGCTGGAGGACGGGGATCCGTCGAAT
TTGTTCGTCATGGAACAAAAAAAGCCGAAATCGAAGGGTTGTTTACGATCGATCCGGATCACCCGATTTATAAAACGGGG
GCAGAGTTCGGAGTGGACATCGATGAGGACGGAATGGTAGTTCTGCAAAGAACGATTACCCATCAAGGAAAAAGCATTTG
CCGGGTTAATGGCAAACTTGTCACTCTTGGCATAATGAAGGAATTCGGAAGAACACTCATCGACATCCATAGTCAACATG
AAACCCAGTCATTGATGGACCCTGAGCGGCATATCGAGTTACTGGATGTTTTCTCCAGCAGTGATTTAAAGCCTTCCCTC
GAGGAATACCGCCGTGTCTATGATAAATATCGCAGCTTAGTGAAACGCTATAAAGAATTAAGTGAAAATGAGCAGGAGAT
GGCTCAACGCTTGGATCTTTTGGAGTTTCAACTTCGTGAACTGCAAGAAGCTGAATTGCAGCCTTTAGAGGACGAACAGT
TGGAAGAAGAACGAAGTAAACTTATGAATTATGAAAAGATCTATCAAGGTATCCATGATGCGTACTATTCATTGTATGGT
GAGCAGAGGGGTTTGGACTGGCTCAGTCATGCAATGACATCGCTTGAAAGCACAGCGGATGTAGATGAACAGTTAGCGAA
ATTGTCCGAAGAACTTTCGAACTCTTATTATTTGATTGAAGAAATGACTTTTCAACTGAGCAATCAAATGGCTGAGCTTG
AATTCGATCCGGAGCGATTAAACTCAATTGAGTCACGACTTGATGAACTGAACCGTTTGAAGAAAAAGTATGGTGCCAAA
GTTGATGACATGTTGCAATATGCCTCGAAGATCGAAGAAGAAATCGATGAAATTCGCAATAAGGATTCACACTTAAATAA
AATGGAGAATGAAATCCACGAATTGGCGCAGGATGCTGTGTTGGAAGCTAAGACTATGCATGATATCCGCACGCATACAG
CAGCGACACTTTCAGATTATATACATGAAGAGTTAAGAGGCCTTTACCTGGAAAAAGCATCGTTTGCTGTTGATATTCAA
ATGAAAGAAGGACGATCCTCCGATCCTGCGTTAGATGGTAAGCCAGTACAACTGCTTCCAAACGGATTCGATATCGTTAA
GTTCTTAATTACCACTAACCCGGGTGAACCACTCAAAGAATTACATAAAGTGGCTTCCGGTGGAGAAATGTCACGTATCA
TGCTCGCATTGAAACGGATTTTTTCACGTCATCAAGGTGTAACCAGTGTAATTTTCGATGAAGTCGACACTGGTGTCAGT
GGGCGGGTAGCTCAAGCGATTGCTGAAAAAATTCATGGCATCTCCGAAGGTTCCCAAGTTCTTTGTATATCTCACTTGCC
ACAAGTAGCGGCTATGGCAGATACACATGTACGAATCGAAAAACGAGTAGATAATGAACGTACTCAAACCGCAGCTGCAG
AACTGAATGATGAGGAAAAAGCAGACGAAATTTCACGGATGATTACAGGTGCAGAGTTGACAGAAACGACAGTCGAGCAT
GCAAAAGAATTGCTTGTAATGGCAGGAAAACATAAAAATAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

56.348

100

0.564

Multiple sequence alignment