Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HLI_RS04765 Genome accession   NZ_CP026118
Coordinates   948849..950657 (-) Length   602 a.a.
NCBI ID   WP_128523508.1    Uniprot ID   A0A410MA50
Organism   Halobacillus litoralis strain ERB 031     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 943849..955657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLI_RS04735 (HLI_04870) - 944068..944967 (-) 900 WP_128526815.1 RluA family pseudouridine synthase -
  HLI_RS04740 (HLI_04875) - 944951..945757 (-) 807 WP_128523499.1 NAD kinase -
  HLI_RS04745 (HLI_04880) - 945772..946410 (-) 639 WP_128523500.1 GTP pyrophosphokinase family protein -
  HLI_RS04750 (HLI_04885) - 946543..947124 (+) 582 WP_128523502.1 CYTH domain-containing protein -
  HLI_RS04755 (HLI_04890) - 947179..947577 (+) 399 WP_128523504.1 globin -
  HLI_RS04760 (HLI_04895) - 947574..948461 (+) 888 WP_128523506.1 ClpXP adapter SpxH family protein -
  HLI_RS21490 - 948632..948808 (+) 177 WP_164908486.1 hypothetical protein -
  HLI_RS04765 (HLI_04900) pepF 948849..950657 (-) 1809 WP_128523508.1 oligoendopeptidase F Regulator
  HLI_RS04770 (HLI_04905) - 950724..951023 (-) 300 WP_128523510.1 hypothetical protein -
  HLI_RS04775 (HLI_04910) - 951191..951871 (-) 681 WP_128523511.1 competence protein CoiA family protein -
  HLI_RS04780 (HLI_04915) mecA 951965..952660 (-) 696 WP_128523513.1 adaptor protein MecA -
  HLI_RS04785 (HLI_04920) - 952958..953623 (+) 666 WP_128523515.1 TerC family protein -
  HLI_RS04790 (HLI_04925) spxA 953791..954186 (-) 396 WP_128523517.1 transcriptional regulator SpxA -
  HLI_RS04795 (HLI_04930) - 954470..955066 (-) 597 WP_128523519.1 GNAT family N-acetyltransferase -
  HLI_RS04800 (HLI_04935) - 955133..955357 (-) 225 WP_128523521.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69326.62 Da        Isoelectric Point: 4.6312

>NTDB_id=267267 HLI_RS04765 WP_128523508.1 948849..950657(-) (pepF) [Halobacillus litoralis strain ERB 031]
MSSTKELPKREEVPVEKTWDLESMFATDEAWYQELEETKELLPELEKYQGKLGESAEQLYELLSFQDKISNKIGLLYTYA
HMRNDQDTTNSHYQELNAKAESLYTKIASAMSFVVPEILALPEGKVKSFIESYEPLELYEHTLDEITRQRAHVLSEKEEK
LLAGFSEIGSNPSQTFGALNNADITFPTIKNEKGEEVDLTHGRYINFLKSDDREVRKEAFKAMYDTFGSFKNTFASTLSG
HVKKNNFNATVRKYDRARQAKLDNNNIPESVYDNLIDAVNDRLSLLHRYVELRKEVLELDEVHMYDLYTPLVKEAEMEVT
YEEAQELVVKGLKPLGEEYVNLLNEGFENRWIDVVENKGKRSGAYSSGHYGTNPYILMNWQDNVNNLFTLAHELGHSLHS
HYTHENQPYRYGNYSIFVAEVASTCNEALLNDHMLKNTNSDKEKLYLLNNFLEGFRGTVFRQTMFAEFEHEIHVQAQNGE
ALTADKLTELYYDLNKKYFGENIVVDDEIGLEWARIPHFYMGYYVYQYSTGYAAAQALAGQILEEGDPAVERYKSFLKAG
SSDYPIEVLKRAGVDMTSKDPILAALDVFEEKLDEMEALLKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=267267 HLI_RS04765 WP_128523508.1 948849..950657(-) (pepF) [Halobacillus litoralis strain ERB 031]
ATGTCGTCTACGAAAGAACTGCCAAAAAGAGAAGAGGTACCTGTAGAAAAGACGTGGGATCTGGAGTCCATGTTTGCTAC
AGATGAAGCTTGGTATCAAGAATTAGAAGAAACGAAGGAGTTGCTTCCTGAATTAGAAAAATATCAGGGGAAATTGGGCG
AATCTGCCGAGCAACTTTATGAGCTTCTTTCTTTTCAAGATAAAATATCTAATAAAATCGGTTTGCTTTATACTTATGCA
CATATGCGTAATGACCAGGACACGACCAATTCCCATTACCAGGAATTGAATGCGAAAGCGGAATCGTTGTACACGAAAAT
CGCTTCGGCAATGAGTTTTGTCGTACCTGAAATTCTTGCGCTTCCTGAAGGAAAAGTGAAAAGCTTCATTGAGTCGTATG
AACCTCTTGAACTCTATGAACACACACTTGATGAAATTACACGCCAGCGTGCACACGTCCTGAGTGAAAAAGAGGAAAAA
CTTCTTGCGGGATTCTCAGAGATTGGTTCGAATCCTTCTCAGACATTCGGCGCTTTGAATAATGCTGATATTACTTTCCC
GACAATTAAAAACGAAAAAGGGGAAGAAGTGGATCTGACCCATGGCCGTTACATCAACTTTTTGAAATCTGATGATCGTG
AAGTTCGCAAGGAAGCATTCAAAGCTATGTACGATACATTCGGTTCGTTCAAAAACACGTTTGCATCAACGCTGAGCGGC
CATGTAAAGAAAAATAATTTCAATGCGACAGTAAGAAAGTACGACAGGGCGCGCCAAGCCAAGCTGGACAATAATAACAT
TCCAGAGTCGGTTTATGACAACTTGATCGATGCTGTAAATGATCGCTTGTCCCTTTTGCATCGCTATGTAGAGTTGCGTA
AGGAAGTATTAGAGCTTGATGAAGTCCATATGTACGACCTTTACACACCACTAGTGAAAGAAGCTGAGATGGAAGTAACT
TATGAAGAGGCGCAGGAGCTCGTCGTGAAAGGTTTAAAGCCACTTGGTGAAGAGTATGTGAACCTACTGAATGAGGGCTT
TGAAAACCGCTGGATTGATGTAGTGGAAAACAAAGGAAAGAGAAGCGGTGCGTATTCTTCCGGACATTATGGCACGAATC
CTTATATCCTAATGAATTGGCAGGATAACGTCAACAATTTATTCACCCTTGCCCATGAGCTCGGGCATTCGCTGCATAGT
CACTATACTCATGAAAACCAGCCCTATCGCTACGGTAACTATTCAATTTTCGTTGCTGAAGTGGCTTCCACTTGTAATGA
GGCCCTGTTGAATGATCATATGCTGAAAAACACCAACAGTGATAAAGAGAAACTTTATCTGCTCAATAACTTTTTGGAAG
GATTCCGCGGCACTGTCTTCCGTCAGACGATGTTCGCTGAATTCGAGCATGAAATCCATGTCCAGGCCCAGAACGGTGAA
GCGTTAACCGCCGATAAACTGACTGAACTCTACTACGACCTTAACAAGAAATATTTCGGCGAGAATATCGTGGTGGATGA
TGAAATCGGGCTTGAATGGGCGAGAATCCCACACTTCTACATGGGCTACTATGTTTATCAGTATTCCACAGGGTACGCGG
CGGCTCAAGCTTTAGCCGGGCAAATCCTTGAAGAAGGCGATCCTGCTGTGGAACGTTATAAAAGTTTCTTGAAAGCGGGG
AGCAGTGATTACCCGATTGAAGTATTGAAGCGGGCTGGTGTCGATATGACATCAAAAGATCCAATCCTGGCTGCTCTGGA
TGTGTTTGAGGAGAAACTGGATGAAATGGAAGCCTTGTTGAAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(208-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410MA50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.256

97.508

0.49

Multiple sequence alignment