Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2H86_RS15890 Genome accession   NZ_CP026115
Coordinates   3492131..3493498 (+) Length   455 a.a.
NCBI ID   WP_060485566.1    Uniprot ID   A0A315SVN3
Organism   Pseudomonas putida strain W5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3487131..3498498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H86_RS15860 (C2H86_02165) cydB 3487381..3488388 (+) 1008 WP_159408859.1 cytochrome d ubiquinol oxidase subunit II -
  C2H86_RS15865 (C2H86_02170) - 3488398..3488553 (+) 156 WP_016489104.1 DUF2474 domain-containing protein -
  C2H86_RS15870 (C2H86_02175) - 3488584..3489708 (-) 1125 WP_159412944.1 methyltransferase -
  C2H86_RS15875 (C2H86_02180) - 3489802..3490512 (-) 711 WP_159408860.1 autoinducer binding domain-containing protein -
  C2H86_RS15880 (C2H86_02185) - 3490726..3491502 (+) 777 WP_159408861.1 ferredoxin--NADP reductase -
  C2H86_RS15885 (C2H86_02190) mscL 3491535..3491954 (-) 420 WP_159408862.1 large-conductance mechanosensitive channel protein MscL -
  C2H86_RS15890 (C2H86_02195) radA 3492131..3493498 (+) 1368 WP_060485566.1 DNA repair protein RadA Machinery gene
  C2H86_RS15895 (C2H86_02200) - 3493559..3495076 (-) 1518 WP_159408863.1 nucleobase:cation symporter-2 family protein -
  C2H86_RS15900 (C2H86_02205) - 3495337..3495702 (-) 366 WP_159408864.1 PilZ domain-containing protein -
  C2H86_RS15905 (C2H86_02210) - 3495868..3497934 (+) 2067 WP_159408865.1 carbon starvation CstA family protein -
  C2H86_RS15910 (C2H86_02215) - 3497948..3498145 (+) 198 WP_103449033.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48662.10 Da        Isoelectric Point: 6.8984

>NTDB_id=267221 C2H86_RS15890 WP_060485566.1 3492131..3493498(+) (radA) [Pseudomonas putida strain W5]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGLPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=267221 C2H86_RS15890 WP_060485566.1 3492131..3493498(+) (radA) [Pseudomonas putida strain W5]
ATGGCCAAGGCCAAGCGTTTGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAGTGGGCTGGCCAATGTGCCGACTG
CGGGGCCTGGAACACCTTGGTCGAAACCATGATCGAAAGCGGCGGTGCGGCTGCCCCCAGCGGCCGCGCCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCTGAAGTCAGCGTCGAAGAAATCCCGCGCTTCACCACCAGCAGCACCGAACTC
GACCGCGTGCTCGGCGGTGGCCTGGTCGATGGCTCGGTGGTACTGATAGGTGGTGACCCGGGGATCGGCAAGTCGACCAT
CCTGCTGCAGACGTTGTGCAACATCGCCGTGGGCCTGCCCGCGCTGTATGTCACCGGTGAAGAGTCGCAGCAGCAGGTGG
CCATGCGCTCGCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAGACCTGCATCGAAACCATCATTGCC
ACCGCACGGGTGGAAAAACCCCGGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAGTCCGCCCC
TGGCGGCGTGGCCCAGGTGCGCGAGAGCACAGCGCTGCTGGTGCGTTATGCCAAGCAGAGTGGTACGGCGATCTTCCTGG
TCGGCCACGTCACCAAGGAAGGCTCGCTGGCCGGGCCGCGGGTACTGGAGCACATGGTCGACACCGTGCTGTACTTCGAG
GGCGAGTCCGACGGCCGCCTGCGTCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACCGTGGCCTTAAAGAGGTGTCCAACCCCTCGGCGATCTTCCTCAACCGCACTCAGGAAGAAGTGCCCGGCA
GTGTGGTCATGGCCACCTGGGAAGGTACCCGGCCTATGCTGGTCGAGGTACAGGCGCTGGTCGATGACAGCCACCTGGCC
AACCCGCGGCGGGTCACTCTGGGCCTGGACCAGAACCGCCTGGCCATGTTGCTGGCGGTACTGCACCGTCACGGTGGCAT
TCCCACCCACGACCAGGATGTCTTTCTAAACGTGGTCGGTGGTGTGAAGGTCCTGGAGACGGCCTCGGACCTGGCGTTGC
TGGCAGCGGTGATGTCCAGCCTGCGCAACCGGCCGTTGGCCCATGGGCTGCTAGTGTTTGGCGAAATTGGTCTGTCGGGC
GAAGTGCGGCCTGTGCCCAGTGGCCAGGAGCGCCTGAAAGAAGCGGCCAAGCATGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAGCCGCCAGCAGGGCTGCAGGTGATTGCCGTGACCCGCCTGGAGCAGGCGCTGGATGCATTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A315SVN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus mitis SK321

46.374

100

0.464
  radA Streptococcus mitis NCTC 12261

46.154

100

0.462

Multiple sequence alignment