Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2L65_RS06220 Genome accession   NZ_CP026111
Coordinates   1385676..1387052 (+) Length   458 a.a.
NCBI ID   WP_042307215.1    Uniprot ID   A0A2I8EI10
Organism   Paraburkholderia terrae strain DSM 17804     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380676..1392052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2L65_RS06200 (C2L65_06200) - 1381137..1382117 (+) 981 WP_042307206.1 DUF1853 family protein -
  C2L65_RS06205 (C2L65_06205) thiD 1382140..1382946 (-) 807 WP_042307208.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  C2L65_RS06210 (C2L65_06210) lplT 1383043..1384350 (-) 1308 WP_042307210.1 lysophospholipid transporter LplT -
  C2L65_RS06215 (C2L65_06215) alr 1384570..1385640 (+) 1071 WP_042307213.1 alanine racemase -
  C2L65_RS06220 (C2L65_06220) radA 1385676..1387052 (+) 1377 WP_042307215.1 DNA repair protein RadA Machinery gene
  C2L65_RS06225 (C2L65_06225) - 1387194..1387457 (+) 264 WP_042307260.1 DUF2866 domain-containing protein -
  C2L65_RS06230 (C2L65_06230) - 1387494..1388579 (-) 1086 WP_174485048.1 CaiB/BaiF CoA-transferase family protein -
  C2L65_RS06235 (C2L65_06235) - 1388637..1390574 (-) 1938 WP_042307217.1 ATP-binding cassette domain-containing protein -
  C2L65_RS06240 (C2L65_06240) - 1390702..1391193 (+) 492 WP_042307219.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48821.30 Da        Isoelectric Point: 7.2041

>NTDB_id=267196 C2L65_RS06220 WP_042307215.1 1385676..1387052(+) (radA) [Paraburkholderia terrae strain DSM 17804]
MAKQKTLYICTECGGQSPKWQGQCPACNAWNTLVESVAESPSAHRFQALAKSQPVQRLAEIHASDVPRFSTGVGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAEIASERRALYVSGEESAAQIALRAQRLSLLEPGSHASELKLLAEIQLEKIQ
ATIADERPDVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRVAKQTGTAIIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQIVPGSCVLVTQEGTRPLLVEVQALVDAANV
PNPRRLAVGLEQNRLAMLLAVLHKHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLIVFGEVGLA
GEIRPSPRGQERLKEAAKLGFSIALIPKANAPKQAIDGLQVIAVERIEQAIDRIRTLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=267196 C2L65_RS06220 WP_042307215.1 1385676..1387052(+) (radA) [Paraburkholderia terrae strain DSM 17804]
TTGGCTAAACAAAAAACGTTGTACATCTGCACGGAATGCGGCGGGCAGTCGCCGAAGTGGCAGGGCCAGTGCCCTGCGTG
CAATGCGTGGAACACACTCGTCGAGTCGGTTGCGGAGTCGCCTTCCGCGCACCGCTTCCAGGCGCTCGCCAAGAGCCAGC
CGGTGCAGCGGCTCGCCGAGATTCATGCGTCGGACGTGCCGCGCTTCTCGACGGGCGTCGGCGAGTTCGATCGCGTGCTC
GGCGGCGGGCTGGTGGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGGATCGGCAAATCGACGCTGCTGTTGCAGTC
GCTTGCGGAAATCGCCAGCGAGCGGCGGGCGCTCTATGTGAGCGGCGAGGAGTCGGCGGCGCAGATTGCGTTGCGCGCGC
AACGGTTGTCGCTGCTCGAACCGGGTTCGCACGCCAGCGAGCTGAAGCTGCTCGCCGAAATCCAGCTGGAGAAAATCCAG
GCGACCATCGCCGACGAAAGGCCGGACGTCGCCGTGATCGACTCGATCCAGACCATCTATTCGGAAGCGCTGACATCCGC
GCCAGGATCGGTGGCGCAGGTGCGCGAATGCGCGGCGCAACTGACGCGCGTCGCCAAGCAGACGGGCACGGCCATCATCA
TGGTCGGCCACGTGACGAAAGAGGGCAGCCTCGCGGGCCCGCGCGTGCTCGAGCATATCGTCGATACCGTGCTGTATTTC
GAAGGCGACACGCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGGGCCGTCAACGAACTGGGCGTGTT
CGCGATGACGGAACGCGGCTTGCGCGGCGTCGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGATCGTGCCCG
GCTCGTGCGTGCTGGTCACGCAAGAGGGCACGCGGCCGCTGCTGGTCGAAGTGCAGGCGCTCGTCGATGCGGCGAACGTG
CCGAATCCGCGCCGGCTGGCTGTCGGCCTCGAACAGAACCGCCTCGCGATGCTGCTCGCCGTGCTGCATAAGCACGCGGG
CATTGCCTGTTTTGATCAGGACGTGTTCCTGAACGCAGTGGGCGGCGTGAAGATCACTGAACCCGCCGCCGACCTCGCCG
TGCTGCTCGCGATTCATTCGTCGATGCGCAACAAGCCGCTGCCGAAGGGGCTGATCGTGTTCGGTGAAGTGGGACTGGCG
GGTGAAATCCGGCCGTCGCCGCGCGGTCAGGAACGTCTGAAGGAAGCCGCGAAACTCGGCTTTTCGATTGCGCTGATTCC
GAAGGCGAACGCGCCGAAGCAAGCCATCGACGGATTGCAGGTGATCGCCGTCGAGCGCATCGAGCAGGCCATCGACCGTA
TCCGAACGCTCGAATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(363-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I8EI10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.542

100

0.509
  radA Streptococcus mitis SK321

48.052

100

0.485
  radA Streptococcus pneumoniae D39

48.156

100

0.485
  radA Streptococcus pneumoniae TIGR4

48.156

100

0.485
  radA Streptococcus pneumoniae R6

48.156

100

0.485
  radA Streptococcus pneumoniae Rx1

48.156

100

0.485
  radA Streptococcus mitis NCTC 12261

47.939

100

0.483

Multiple sequence alignment