Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C2L65_RS01620 Genome accession   NZ_CP026111
Coordinates   352737..354257 (-) Length   506 a.a.
NCBI ID   WP_042306308.1    Uniprot ID   A0A2I8EFQ9
Organism   Paraburkholderia terrae strain DSM 17804     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347737..359257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2L65_RS01595 (C2L65_01595) - 348516..349151 (-) 636 WP_042306311.1 LON peptidase substrate-binding domain-containing protein -
  C2L65_RS01600 (C2L65_01600) rapZ 349216..350109 (-) 894 WP_042306310.1 RNase adapter RapZ -
  C2L65_RS01605 (C2L65_01605) hprK 350187..351155 (-) 969 WP_007579699.1 HPr(Ser) kinase/phosphatase -
  C2L65_RS01610 (C2L65_01610) - 351386..351901 (-) 516 WP_035538101.1 PTS sugar transporter subunit IIA -
  C2L65_RS01615 (C2L65_01615) raiA 352202..352561 (-) 360 WP_007579701.1 ribosome-associated translation inhibitor RaiA -
  C2L65_RS01620 (C2L65_01620) rpoN/rpoN1 352737..354257 (-) 1521 WP_042306308.1 RNA polymerase factor sigma-54 Machinery gene
  C2L65_RS01625 (C2L65_01625) lptB 354498..355280 (-) 783 WP_042306307.1 LPS export ABC transporter ATP-binding protein -
  C2L65_RS01630 (C2L65_01630) lptA 355277..355954 (-) 678 WP_042306306.1 lipopolysaccharide transport periplasmic protein LptA -
  C2L65_RS01635 (C2L65_01635) lptC 355976..356581 (-) 606 WP_042306305.1 LPS export ABC transporter periplasmic protein LptC -
  C2L65_RS01640 (C2L65_01640) - 356578..357138 (-) 561 WP_007579706.1 HAD family hydrolase -
  C2L65_RS01645 (C2L65_01645) kdsD 357138..358121 (-) 984 WP_007579707.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55681.53 Da        Isoelectric Point: 4.8796

>NTDB_id=267190 C2L65_RS01620 WP_042306308.1 352737..354257(-) (rpoN/rpoN1) [Paraburkholderia terrae strain DSM 17804]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAISQNPLLETEDDWIASPLRVAADGTVISQTSQNTSPEGMS
SSPPSSSSSTSSGESQENGEPQGVDEYNGMGSDSNSDANQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRV
TGASARDRALITFLIESLDDDGYLTATFDEILTDLPEELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLCRLEPS
PTRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLREAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELN
PEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREI
ADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQG
FVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=267190 C2L65_RS01620 WP_042306308.1 352737..354257(-) (rpoN/rpoN1) [Paraburkholderia terrae strain DSM 17804]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAGCATCTTGCGCTGACACCACAACTGCAACAGTCCATCCGGCTGCTGCA
GCTGTCTACGCTTGAACTGCAGCAGGAAGTGTCGATGGCGATCTCCCAGAATCCGCTGCTCGAAACGGAAGACGACTGGA
TCGCCAGTCCGTTGCGCGTCGCCGCCGACGGCACGGTCATCTCGCAGACGTCGCAGAACACCTCGCCGGAAGGGATGTCG
AGTTCGCCGCCGTCCTCGTCGTCGTCCACTTCCTCCGGCGAAAGCCAGGAGAACGGCGAACCCCAGGGCGTCGACGAATA
CAACGGCATGGGTTCGGACTCGAACTCGGATGCCAACCAGTGGAATCTCGACGACTACGGCCGTTCGGGCAACGCATCGG
ACGACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACGACGCTGCGCGATCACCTGACTGCTCAACTTCGTGTC
ACGGGAGCAAGCGCACGCGACCGCGCGCTCATCACGTTCCTGATCGAATCACTCGACGACGACGGCTATCTGACGGCCAC
CTTCGACGAAATCCTCACCGATCTCCCCGAAGAACTGGAGGTCGATACCGACGAACTCAACGCGGCCCTCGCCTTACTGC
ACAGCTTCGACCCAGCGGGTGTCGGCGCGCGTTCGGCGTCCGAATGCCTGCGTTTGCAGTTGTGCCGGCTCGAGCCCTCG
CCCACGCGCACGCTCGCGCTCGACATCGTCGCGCATCATCTGGAGCTGCTCGCCGCGCGCGACTTCACGCGTCTGCGCAA
ATACCTGAAGGCAAGCGACGACGATCTGCGCGAAGCGCATGCGCTGATCCGCTCGCTGGAGCCATTCCCCGGCGCGGCCT
ACGGTAAGGCCGAAGCGGACTACGTCGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCGGAACTGAAT
CCCGAAGTCGTGCCGAAACTGCGTATCAACCATCTGTACGCGAATATCCTGCGCAACAATCGCGGCGATCCGGGCAGTGG
TTCGCTGCGGCAGCAACTGCAGGAAGCGCGTTGGCTGATCAAGAATATCCAGCAGCGGTTCGAGACGATCCTGCGTGTCG
CACAAGCAATTGTGGAGCGTCAAAAGAACTTTTTCGCCCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATA
GCTGATACGCTGGGTTTACACGAGTCGACGGTCTCACGTGTGACAACCGGCAAGTACATGCTCACCCCATTCGGGACGCT
TGAATTTAAGTACTTCTTCGGATCGCACGTATCCACCGACACGGGGGGCGCGGCCTCTTCAACGGCCATTCGCGCACTCA
TCAAGCAACTGATAGGAGCGGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCGGAACAGGGT
TTCGTCGTCGCTCGCCGTACCGTTGCGAAATACCGCGAAGCACTGAAGATCCCAGCAGTCAATCTGCGCAAGTCTCTTTA
G

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-333)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.601

100

0.67

Multiple sequence alignment