Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2L64_RS06485 Genome accession   NZ_CP026105
Coordinates   1446824..1448200 (+) Length   458 a.a.
NCBI ID   WP_007580540.1    Uniprot ID   A0AAJ4SYE6
Organism   Paraburkholderia hospita strain DSM 17164     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1441824..1453200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2L64_RS06465 (C2L64_06465) - 1442285..1443265 (+) 981 WP_090835836.1 DUF1853 family protein -
  C2L64_RS06470 (C2L64_06470) thiD 1443288..1444094 (-) 807 WP_007580534.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  C2L64_RS06475 (C2L64_06475) lplT 1444191..1445498 (-) 1308 WP_007580536.1 lysophospholipid transporter LplT -
  C2L64_RS06480 (C2L64_06480) alr 1445718..1446788 (+) 1071 WP_007580538.1 alanine racemase -
  C2L64_RS06485 (C2L64_06485) radA 1446824..1448200 (+) 1377 WP_007580540.1 DNA repair protein RadA Machinery gene
  C2L64_RS06490 (C2L64_06490) - 1448341..1448604 (+) 264 WP_090835883.1 DUF2866 domain-containing protein -
  C2L64_RS06495 (C2L64_06495) - 1448641..1449726 (-) 1086 WP_176133858.1 CaiB/BaiF CoA-transferase family protein -
  C2L64_RS06500 (C2L64_06500) - 1449784..1451721 (-) 1938 WP_090835835.1 ATP-binding cassette domain-containing protein -
  C2L64_RS06505 (C2L64_06505) - 1451848..1452339 (+) 492 WP_007580549.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48826.30 Da        Isoelectric Point: 7.2388

>NTDB_id=267180 C2L64_RS06485 WP_007580540.1 1446824..1448200(+) (radA) [Paraburkholderia hospita strain DSM 17164]
MAKQKTLYICTECGGQSPKWQGQCPACHAWNTLVESVAESPSAHRFQALAKSQPVQRLAEIHASDVPRFSTGVGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAEIASERRALYVSGEESAAQIALRAQRLSLLEPGSHASELKLLAEIQLEKIQ
ATIAEERPDVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRVAKQSGTAIILVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQIVPGSCVLVTQEGTRPLLVEVQALVDAANV
PNPRRLAVGLEQNRLAMLLAVLHKHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLIVFGEVGLA
GEIRPSPRGQERLKEAAKLGFSIALIPKANAPKQAIDGLQVIAVERIEQAIDRIRTLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=267180 C2L64_RS06485 WP_007580540.1 1446824..1448200(+) (radA) [Paraburkholderia hospita strain DSM 17164]
TTGGCTAAACAAAAAACGTTGTACATCTGCACGGAATGCGGCGGGCAGTCGCCGAAGTGGCAGGGCCAGTGCCCTGCGTG
TCATGCGTGGAACACGCTCGTCGAGTCGGTTGCGGAGTCGCCTTCCGCGCACCGCTTCCAGGCGCTGGCCAAGAGCCAGC
CGGTGCAGCGGCTCGCCGAGATTCATGCGTCGGACGTGCCGCGCTTTTCGACGGGCGTCGGCGAGTTCGATCGCGTGCTC
GGCGGCGGGCTGGTGGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGGATCGGCAAATCGACGCTGCTGTTGCAGTC
GCTTGCGGAAATCGCCAGCGAGCGGCGCGCGCTGTATGTGAGCGGGGAGGAGTCGGCGGCGCAGATTGCGTTGCGCGCGC
AACGGTTGTCGCTGCTCGAACCGGGCTCGCACGCCAGCGAGCTGAAGCTGCTCGCCGAAATCCAGCTGGAGAAAATCCAG
GCGACCATCGCCGAAGAGAGGCCGGACGTCGCCGTGATCGACTCGATCCAGACCATCTATTCGGAGGCGCTGACGTCCGC
GCCAGGATCGGTGGCGCAGGTGCGCGAATGCGCGGCGCAACTGACCCGCGTCGCCAAGCAGTCGGGCACGGCCATCATCC
TGGTCGGCCACGTGACGAAAGAGGGCAGCCTCGCGGGCCCGCGCGTGCTTGAGCATATCGTCGATACCGTGCTGTATTTC
GAAGGTGACACACATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGGGCCGTCAACGAGCTGGGCGTGTT
CGCGATGACGGAACGCGGCTTGCGCGGCGTCGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGATCGTGCCCG
GCTCGTGCGTCCTGGTCACGCAAGAGGGCACGCGGCCGCTGCTGGTCGAAGTGCAGGCGCTCGTCGACGCGGCGAATGTG
CCGAATCCGCGCCGGCTGGCCGTCGGCCTCGAACAGAACCGCCTCGCGATGCTGCTCGCCGTGCTGCACAAGCACGCGGG
TATCGCCTGTTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCACCGAGCCCGCCGCCGATCTCGCCG
TGCTGCTCGCGATTCATTCGTCGATGCGCAACAAGCCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGATTGGCG
GGTGAAATCCGGCCGTCGCCGCGCGGCCAGGAACGTCTGAAGGAAGCCGCGAAACTCGGCTTTTCGATTGCGCTGATTCC
CAAGGCGAACGCGCCGAAGCAAGCCATCGACGGATTGCAGGTGATCGCCGTCGAGCGCATCGAGCAGGCCATCGATCGTA
TCCGAACGCTCGAATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(363-452)

AAA domain (AAA_25)

(80-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.759

100

0.511
  radA Streptococcus mitis SK321

48.052

100

0.485
  radA Streptococcus pneumoniae D39

48.156

100

0.485
  radA Streptococcus pneumoniae TIGR4

48.156

100

0.485
  radA Streptococcus pneumoniae R6

48.156

100

0.485
  radA Streptococcus pneumoniae Rx1

48.156

100

0.485
  radA Streptococcus mitis NCTC 12261

47.939

100

0.483

Multiple sequence alignment