Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C2L64_RS01815 Genome accession   NZ_CP026105
Coordinates   408512..410032 (-) Length   506 a.a.
NCBI ID   WP_090834977.1    Uniprot ID   -
Organism   Paraburkholderia hospita strain DSM 17164     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403512..415032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2L64_RS01790 (C2L64_01790) - 404277..404912 (-) 636 WP_007579697.1 LON peptidase substrate-binding domain-containing protein -
  C2L64_RS01795 (C2L64_01795) rapZ 404977..405870 (-) 894 WP_007579698.1 RNase adapter RapZ -
  C2L64_RS01800 (C2L64_01800) hprK 405948..406916 (-) 969 WP_007579699.1 HPr(Ser) kinase/phosphatase -
  C2L64_RS01805 (C2L64_01805) - 407161..407676 (-) 516 WP_079484248.1 PTS sugar transporter subunit IIA -
  C2L64_RS01810 (C2L64_01810) hpf 407977..408336 (-) 360 WP_007579701.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  C2L64_RS01815 (C2L64_01815) rpoN/rpoN1 408512..410032 (-) 1521 WP_090834977.1 RNA polymerase factor sigma-54 Machinery gene
  C2L64_RS01820 (C2L64_01820) lptB 410262..411044 (-) 783 WP_007579703.1 LPS export ABC transporter ATP-binding protein -
  C2L64_RS01825 (C2L64_01825) lptA 411041..411718 (-) 678 WP_007579704.1 lipopolysaccharide transport periplasmic protein LptA -
  C2L64_RS01830 (C2L64_01830) lptC 411749..412345 (-) 597 WP_090834978.1 LPS export ABC transporter periplasmic protein LptC -
  C2L64_RS01835 (C2L64_01835) - 412342..412902 (-) 561 WP_007579706.1 HAD family hydrolase -
  C2L64_RS01840 (C2L64_01840) kdsD 412902..413885 (-) 984 WP_090834979.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55626.45 Da        Isoelectric Point: 4.8741

>NTDB_id=267174 C2L64_RS01815 WP_090834977.1 408512..410032(-) (rpoN/rpoN1) [Paraburkholderia hospita strain DSM 17164]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAISQNPLLETEDDWIASPLRVAADGTVISQTSQNTSPEGMS
SSPPSSSSSTSSGDSQESGEPQGVDEYNGMGSDSNSDANQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRV
TGASARDRALITFLIESLDDDGYLTATFDEILTDLPDELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLCRLEPS
PTRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLREAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELN
PEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREI
ADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQG
FVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=267174 C2L64_RS01815 WP_090834977.1 408512..410032(-) (rpoN/rpoN1) [Paraburkholderia hospita strain DSM 17164]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAGCATCTTGCGCTGACACCACAACTGCAACAGTCCATCCGGCTGCTGCA
GCTGTCTACGCTTGAACTGCAACAGGAAGTGTCGATGGCGATCTCCCAGAATCCGTTGCTCGAAACGGAGGACGACTGGA
TCGCGAGTCCGTTGCGCGTCGCCGCCGACGGCACGGTCATCTCGCAGACGTCGCAGAACACCTCGCCGGAAGGGATGTCG
AGTTCGCCACCGTCTTCGTCGTCGTCCACTTCCTCCGGCGACAGCCAGGAGAGCGGCGAACCCCAAGGCGTCGACGAATA
CAACGGCATGGGTTCGGACTCGAACTCGGATGCGAACCAGTGGAATCTCGACGACTACGGCCGTTCGGGCAATGCATCGG
ACGACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACGACGCTGCGCGATCACCTGACTGCTCAACTTCGTGTA
ACGGGAGCAAGCGCACGCGACCGCGCACTCATCACGTTCCTGATCGAATCACTCGACGACGACGGCTATCTGACGGCCAC
CTTCGACGAAATCCTCACCGATCTCCCCGACGAACTGGAAGTCGATACCGACGAACTCAACGCGGCCCTCGCCTTACTGC
ACAGCTTCGATCCCGCGGGTGTCGGCGCGCGTTCGGCGTCCGAATGCCTGCGTTTGCAGTTGTGCCGGCTCGAGCCGTCG
CCCACGCGCACGCTCGCGCTCGACATCGTCGCGCATCATCTGGAGTTGCTCGCCGCGCGCGACTTCACGCGTCTGCGCAA
ATACCTGAAGGCAAGCGACGACGATCTGCGCGAAGCGCATGCGCTGATCCGCTCGCTGGAGCCGTTCCCGGGCGCGGCCT
ACGGCAAGGCCGAAGCGGACTACGTTGTGCCTGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCGGAACTGAAT
CCGGAAGTCGTGCCGAAACTGCGTATCAACCATCTGTACGCGAATATCCTGCGCAACAATCGCGGCGATCCGGGCAGCGG
TTCGCTGCGGCAGCAACTGCAGGAAGCGCGTTGGCTGATCAAGAATATCCAGCAGCGGTTCGAGACGATCCTGCGTGTCG
CACAGGCAATTGTGGAGCGTCAAAAGAACTTTTTCGCTCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATA
GCTGATACGCTGGGTTTACACGAGTCGACGGTCTCACGTGTGACAACCGGCAAGTACATGCTCACCCCATTCGGGACGCT
TGAATTTAAGTACTTCTTCGGATCGCACGTATCCACCGACACGGGGGGCGCGGCCTCTTCAACGGCCATTCGCGCACTCA
TCAAGCAACTGATAGGAGCGGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCGGAACAGGGT
TTCGTCGTCGCTCGCCGTACCGTTGCGAAATACCGCGAAGCACTGAAGATCCCAGCAGTCAATCTGCGCAAGTCTCTTTA
G

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-333)

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.996

100

0.67

Multiple sequence alignment