Detailed information NTG0026717

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LPC_RS06785
• Genome accession: NC_009494
• Coordinates: 1492775..1493800 (+)
• Length: 341 a.a.
• NCBI ID: WP_011946339.1
• Uniprot ID: -
• Organism: Legionella pneumophila str. Corby
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1487775..1498800

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPC_RS06755 (LPC_0703)	-	1488206..1488523 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
LPC_RS06760 (LPC_0704)	-	1488560..1488931 (+)	372	WP_011946334.1	protease inhibitor I42 family protein	-
LPC_RS06765 (LPC_0705)	-	1488979..1490703 (-)	1725	WP_011946335.1	NAD-dependent malic enzyme	-
LPC_RS06770 (LPC_0706)	-	1490783..1491166 (+)	384	WP_011946336.1	hypothetical protein	-
LPC_RS06775 (LPC_0707)	surE	1491169..1491927 (+)	759	WP_011946337.1	5'/3'-nucleotidase SurE	-
LPC_RS06780 (LPC_0708)	-	1491946..1492689 (+)	744	WP_011213595.1	peptidoglycan DD-metalloendopeptidase family protein	-
LPC_RS06785 (LPC_0709)	rpoS	1492775..1493800 (+)	1026	WP_011946339.1	RNA polymerase sigma factor RpoS	Regulator
LPC_RS06790 (LPC_0710)	hmgA	1493900..1495150 (-)	1251	WP_011946340.1	homogentisate 1,2-dioxygenase	-
LPC_RS06795 (LPC_0711)	-	1495298..1496041 (+)	744	WP_011946341.1	YebC/PmpR family DNA-binding transcriptional regulator	-
LPC_RS06800 (LPC_0712)	ruvC	1496041..1496565 (+)	525	WP_011946342.1	crossover junction endodeoxyribonuclease RuvC	-
LPC_RS06805 (LPC_0713)	ruvA	1496562..1497161 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
LPC_RS06810 (LPC_0714)	-	1497213..1497533 (+)	321	WP_011946343.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39467.72 Da
• Isoelectric Point: 4.3705

>NTDB_id=26717 LPC_RS06785 WP_011946339.1 1492775..1493800(+) (rpoS) [Legionella pneumophila str. Corby]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEDLDEFPEFTDDEVFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=26717 LPC_RS06785 WP_011946339.1 1492775..1493800(+) (rpoS) [Legionella pneumophila str. Corby]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGATCTTGATGAATTTCCAGAGTTTACTGATGATGAAG
TTTTTCCTTCATTTCAGCGCGGGAAAAACATTGCTAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGCTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTGGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACTCTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548