Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2L66_RS06425 Genome accession   NZ_CP026101
Coordinates   1443657..1445033 (+) Length   458 a.a.
NCBI ID   WP_035990795.1    Uniprot ID   A0A0P0RBJ4
Organism   Paraburkholderia caribensis strain DSM 13236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1438657..1450033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2L66_RS06405 (C2L66_06405) - 1439108..1440088 (+) 981 WP_060601298.1 DUF1853 family protein -
  C2L66_RS06410 (C2L66_06410) thiD 1440111..1440917 (-) 807 WP_060601296.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  C2L66_RS06415 (C2L66_06415) lplT 1441014..1442321 (-) 1308 WP_060601293.1 lysophospholipid transporter LplT -
  C2L66_RS06420 (C2L66_06420) alr 1442541..1443611 (+) 1071 WP_054934454.1 alanine racemase -
  C2L66_RS06425 (C2L66_06425) radA 1443657..1445033 (+) 1377 WP_035990795.1 DNA repair protein RadA Machinery gene
  C2L66_RS06430 (C2L66_06430) - 1445173..1445436 (+) 264 WP_035991350.1 DUF2866 domain-containing protein -
  C2L66_RS06435 (C2L66_06435) - 1445433..1446560 (-) 1128 WP_098021538.1 CaiB/BaiF CoA-transferase family protein -
  C2L66_RS06440 (C2L66_06440) - 1446618..1448555 (-) 1938 WP_060601290.1 ATP-binding cassette domain-containing protein -
  C2L66_RS06445 (C2L66_06445) - 1448682..1449173 (+) 492 WP_054934456.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48786.30 Da        Isoelectric Point: 7.2387

>NTDB_id=267165 C2L66_RS06425 WP_035990795.1 1443657..1445033(+) (radA) [Paraburkholderia caribensis strain DSM 13236]
MAKQKTLYICTECGGQSPKWQGQCPACHAWNTLVESVAESPSAHRFQALAKSQPVQRLAEIHASDVPRFSTGVGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAEIASERRALYVSGEESAAQIALRAQRLSLLEPGSHASELKLLAEIQLEKIQ
ATIADEKPDVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRVAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQIVPGSCVLVTQEGTRPLLVEVQALVDAANV
PNPRRLAVGLEQNRLAMLLAVLHKHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLIVFGEVGLA
GEIRPSPRGQERLKEAAKLGFSIALIPKANAPKQAIDGLQVIAVERIEQAIDRIRTLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=267165 C2L66_RS06425 WP_035990795.1 1443657..1445033(+) (radA) [Paraburkholderia caribensis strain DSM 13236]
TTGGCTAAACAGAAAACGTTGTACATCTGCACGGAATGCGGCGGGCAATCGCCGAAGTGGCAGGGCCAGTGCCCTGCATG
TCATGCGTGGAACACGCTCGTCGAATCGGTCGCGGAGTCGCCTTCCGCGCACCGCTTCCAGGCGCTTGCCAAGAGCCAGC
CGGTGCAGCGGCTGGCTGAAATCCATGCGTCGGACGTGCCGCGCTTTTCGACGGGCGTCGGCGAGTTCGATCGCGTGCTC
GGCGGCGGACTGGTGGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGGATCGGCAAATCGACGCTGCTGTTGCAGTC
GCTCGCGGAAATCGCCAGCGAGCGGCGGGCGCTCTATGTGAGCGGCGAGGAATCGGCGGCGCAGATTGCGTTGCGCGCGC
AACGGTTGTCGCTGCTCGAACCGGGTTCGCACGCCAGCGAGCTGAAGCTGCTGGCCGAAATCCAGCTGGAGAAAATCCAG
GCGACCATCGCCGACGAAAAGCCGGACGTCGCCGTGATCGACTCGATCCAGACCATCTATTCTGAAGCGCTGACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCCGCGCAACTGACGCGCGTCGCCAAGCAGTCCGGCACGGCCATCATCA
TGGTCGGCCACGTGACGAAAGAGGGCGCGCTGGCTGGTCCGCGCGTGCTCGAGCATATTGTCGATACCGTGCTGTATTTC
GAAGGCGACACGCATTCGTCGTTCCGGCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAATGAGCTGGGCGTGTT
CGCGATGACGGAACGCGGCCTGCGCGGCGTCGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGATCGTGCCTG
GCTCGTGCGTGCTGGTCACGCAGGAAGGCACGCGGCCGCTGCTGGTCGAAGTGCAGGCGCTCGTCGATGCGGCGAACGTG
CCGAATCCGCGCCGGCTTGCCGTCGGCCTCGAACAGAACCGTCTCGCGATGCTGCTCGCCGTGCTGCACAAGCACGCGGG
CATCGCCTGTTTCGATCAGGATGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCCG
TGCTGCTCGCGATTCATTCGTCGATGCGCAACAAGCCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGTTGGCG
GGTGAAATCCGGCCGTCGCCGCGCGGTCAGGAACGTCTGAAGGAAGCCGCGAAACTCGGTTTTTCGATTGCGCTGATTCC
GAAGGCGAATGCTCCGAAGCAAGCTATCGACGGATTGCAGGTGATCGCCGTCGAGCGCATTGAGCAGGCAATCGACCGTA
TCCGAACGCTCGAATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(363-452)

AAA domain (AAA_25)

(80-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P0RBJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.325

100

0.507
  radA Streptococcus mitis SK321

48.052

100

0.485
  radA Streptococcus pneumoniae D39

48.156

100

0.485
  radA Streptococcus pneumoniae TIGR4

48.156

100

0.485
  radA Streptococcus pneumoniae R6

48.156

100

0.485
  radA Streptococcus pneumoniae Rx1

48.156

100

0.485
  radA Streptococcus mitis NCTC 12261

47.939

100

0.483

Multiple sequence alignment