Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C1707_RS17270 Genome accession   NZ_CP026100
Coordinates   3778360..3779742 (-) Length   460 a.a.
NCBI ID   WP_101712935.1    Uniprot ID   A0A2N5CUC9
Organism   Caulobacter flavus strain RHGG3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3773360..3784742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1707_RS17250 (C1707_17230) - 3774318..3775067 (-) 750 WP_101712939.1 SDR family NAD(P)-dependent oxidoreductase -
  C1707_RS17255 (C1707_17235) - 3775112..3776098 (-) 987 WP_101712938.1 bile acid:sodium symporter family protein -
  C1707_RS17260 (C1707_17240) purF 3776241..3777743 (-) 1503 WP_101712937.1 amidophosphoribosyltransferase -
  C1707_RS17265 (C1707_17245) - 3777740..3778363 (-) 624 WP_101712936.1 CvpA family protein -
  C1707_RS17270 (C1707_17250) radA 3778360..3779742 (-) 1383 WP_101712935.1 DNA repair protein RadA Machinery gene
  C1707_RS17275 (C1707_17255) - 3779915..3781108 (+) 1194 WP_101712934.1 Yip1 family protein -
  C1707_RS17280 (C1707_17260) alr 3781126..3782208 (-) 1083 WP_101712933.1 alanine racemase -
  C1707_RS17285 (C1707_17265) - 3782333..3783055 (+) 723 WP_145998360.1 hypothetical protein -
  C1707_RS17290 (C1707_17270) - 3783069..3783755 (-) 687 WP_101712931.1 MarC family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47799.62 Da        Isoelectric Point: 5.8452

>NTDB_id=267153 C1707_RS17270 WP_101712935.1 3778360..3779742(-) (radA) [Caulobacter flavus strain RHGG3]
MARDGAVYACQSCGAVQTKWAGQCPACQSWNTLVEEVGVRPPGAMSTTKATRSRGLQFTGLESDTPAPPRILTGVDEFDR
VCGGGVVPGSAILIGGDPGVGKSTLLLQVCANASSRGVACAYISGEEAVEQIRGRADRMGLAGAPVKLAAESSLRDILDG
LKRDRFDLVVIDSIQTMWSDAHEAGPGTVTQVRACATELVRLAKQKGVAILLVGHVTKDGQIAGPRVVEHLVDAVLSFEG
ERGYPFRILRGAKNRFGATDEIGVFEMGDVGLREVKNPSALFLNEGGERAAGAAVFAGIEGSRPVLVEFQALVAPSAYGT
PRRAVVGWDSGRLAMVLAVLESRCGLGFGDKDVYLNVAGGLRITEPAADLAAAAALASSAMDVALPQDCVVFGEVSLSGE
IRPVSRMESRLKEAAKLGFGRALGPLSGLPEGGGALPVAGAARLADAVRRIENDIWSSHA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=267153 C1707_RS17270 WP_101712935.1 3778360..3779742(-) (radA) [Caulobacter flavus strain RHGG3]
ATGGCCCGCGACGGCGCCGTCTACGCCTGCCAGTCCTGCGGGGCGGTTCAGACCAAGTGGGCCGGGCAATGCCCCGCCTG
CCAGAGCTGGAACACGCTCGTCGAAGAGGTCGGCGTGCGCCCGCCCGGCGCGATGTCGACGACCAAGGCCACGCGGTCTC
GCGGCCTGCAGTTCACCGGCCTGGAGAGCGACACCCCCGCCCCGCCCCGCATCCTGACCGGCGTCGACGAGTTCGACCGG
GTCTGCGGCGGCGGCGTGGTGCCCGGCTCGGCGATCCTGATCGGCGGCGACCCGGGCGTGGGCAAGTCGACCCTGCTGCT
GCAGGTCTGCGCCAACGCCTCGAGCCGGGGCGTGGCCTGCGCCTACATCTCGGGCGAAGAGGCCGTCGAGCAGATCCGCG
GCCGGGCCGACCGCATGGGGCTGGCCGGCGCGCCGGTGAAGCTGGCCGCCGAGAGCAGCCTGCGCGACATCCTCGACGGA
CTGAAGCGCGACAGGTTCGACCTGGTCGTCATCGACTCGATCCAGACCATGTGGAGCGACGCCCACGAGGCCGGTCCCGG
CACGGTCACCCAGGTCCGCGCCTGCGCCACCGAATTGGTGCGGCTGGCCAAGCAGAAGGGCGTGGCGATCCTGCTGGTCG
GTCACGTCACCAAGGACGGCCAGATCGCCGGCCCGCGCGTGGTCGAACACCTGGTGGACGCCGTGCTGAGCTTCGAGGGC
GAGCGCGGCTATCCGTTCCGCATTCTGCGCGGCGCCAAGAACCGCTTCGGGGCCACCGACGAGATCGGCGTGTTCGAGAT
GGGCGACGTGGGCCTGCGCGAGGTGAAGAACCCCTCGGCCCTGTTCCTCAACGAAGGCGGCGAGCGCGCGGCGGGGGCGG
CGGTGTTCGCCGGCATCGAGGGATCGCGGCCCGTTCTGGTCGAGTTCCAGGCCCTGGTCGCGCCTTCCGCGTACGGAACG
CCCAGACGCGCCGTGGTCGGATGGGATTCCGGACGCCTGGCCATGGTGCTGGCCGTGCTGGAATCGCGCTGCGGCCTTGG
TTTTGGCGACAAGGACGTCTATCTGAACGTCGCCGGCGGGCTGAGGATCACCGAACCCGCCGCCGACCTCGCGGCGGCGG
CCGCTCTGGCCTCCTCGGCCATGGACGTCGCCCTGCCGCAGGACTGCGTGGTGTTCGGCGAGGTCAGCCTCTCCGGCGAG
ATCCGGCCCGTGAGCCGAATGGAGTCGCGTTTGAAGGAAGCCGCCAAGCTCGGGTTCGGCCGCGCGCTGGGACCGCTGTC
GGGCCTGCCCGAAGGCGGCGGCGCCCTGCCGGTGGCCGGCGCGGCGCGACTGGCCGACGCGGTCCGCCGAATCGAGAACG
ACATCTGGAGCTCGCACGCGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(339-423)

AAA domain (AAA_25)

(85-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N5CUC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.366

99.783

0.483
  radA Streptococcus pneumoniae Rx1

45.733

99.348

0.454
  radA Streptococcus pneumoniae D39

45.733

99.348

0.454
  radA Streptococcus pneumoniae R6

45.733

99.348

0.454
  radA Streptococcus pneumoniae TIGR4

45.733

99.348

0.454
  radA Streptococcus mitis NCTC 12261

47.332

93.696

0.443
  radA Streptococcus mitis SK321

47.332

93.696

0.443

Multiple sequence alignment