Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BAOM_RS16875 Genome accession   NZ_CP026095
Coordinates   3425151..3426866 (-) Length   571 a.a.
NCBI ID   WP_127761283.1    Uniprot ID   A0A3Q9RPM3
Organism   Peribacillus asahii strain OM18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3420151..3431866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAOM_RS16860 (BAOM_3652) - 3420823..3422400 (-) 1578 WP_127761280.1 DUF342 domain-containing protein -
  BAOM_RS16865 (BAOM_3653) spo0A 3422565..3423353 (-) 789 WP_127761281.1 sporulation transcription factor Spo0A -
  BAOM_RS16870 (BAOM_3655) spoIVB 3423725..3425020 (-) 1296 WP_127761282.1 SpoIVB peptidase -
  BAOM_RS16875 (BAOM_3656) recN 3425151..3426866 (-) 1716 WP_127761283.1 DNA repair protein RecN Machinery gene
  BAOM_RS16880 (BAOM_3657) ahrC 3426887..3427336 (-) 450 WP_119115461.1 transcriptional regulator AhrC/ArgR -
  BAOM_RS16885 (BAOM_3658) - 3427622..3428449 (-) 828 WP_127761284.1 TlyA family RNA methyltransferase -
  BAOM_RS16890 (BAOM_3659) dxs 3428454..3430346 (-) 1893 WP_127761285.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BAOM_RS16895 (BAOM_3660) - 3430780..3431670 (-) 891 WP_127762614.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64583.56 Da        Isoelectric Point: 5.2009

>NTDB_id=267071 BAOM_RS16875 WP_127761283.1 3425151..3426866(-) (recN) [Peribacillus asahii strain OM18]
MLSELSIKNFAIIDSLAISLEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGETKAEIEGLFQIDEPQHPVFVK
ASEFGIDISDGMVVIRREMSTSGKSVCRVNGKLVTIATLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEEVMLAL
LEYEKLYKRYNTAQKQLKSLSQDEQQMVHRLDLIQFQFDEIQKADLKLHEDEQLLEERKKINNYEKIHEALQTSYNALNG
EQHGLDWLSIAMHHLEEAANLDESLKNSSDIVSNSYFLLEDAISTIRDQLDSLDFDTERIDFIEGRLNEINQLKRKYGRT
IEEIVEYGAKIEEEIETLLNRETHIAKLEKELNSIKADLLIEAKHLSSLRQTYAEQLTKKIKQELKELYMEKTVFEAHFH
QTAHTFDETIDREINRTGLDVMEFYISTNPGEPLKPLSKIASGGEMSRIMLALKSIFSQHQGITSIIFDEVDTGVSGRVA
QSIGEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKKVTEGRTHTSVTPLAEEEKIKEIGRMIAGVEITDLTKQHANEL
IQQAHKIKVTS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=267071 BAOM_RS16875 WP_127761283.1 3425151..3426866(-) (recN) [Peribacillus asahii strain OM18]
TTGTTATCAGAATTATCGATTAAAAATTTTGCCATTATAGATAGTTTAGCGATTTCTTTAGAAAAAGGTTTAACGGTGCT
AACTGGAGAAACGGGAGCGGGAAAGTCCATTATTATTGATGCTGTTCACTTATTAGTAGGGGGACGCGGGTCAGCAGAGT
TTATTCGACATGGGGAAACGAAGGCTGAAATCGAAGGGCTATTTCAAATTGATGAGCCGCAGCACCCTGTTTTTGTTAAA
GCATCGGAATTTGGGATTGATATAAGTGATGGCATGGTTGTTATAAGACGAGAAATGTCTACGAGTGGCAAAAGCGTATG
TCGAGTAAACGGAAAGCTTGTGACCATCGCTACGTTACGTGAAATTGGTCGAACGCTTATCGATATTCATGGACAGCACG
AACATCAAGAGCTGATGGATGAACGTCTTCATTTACCTTTACTTGATCAATTTGGCGGGGAAGAGGTTATGTTAGCGCTT
TTGGAATATGAAAAGCTATATAAGCGCTATAACACTGCTCAGAAGCAGTTAAAAAGTCTCAGCCAGGACGAGCAGCAAAT
GGTGCATCGACTCGATTTAATTCAGTTTCAATTTGATGAAATTCAAAAGGCTGATTTGAAGCTGCACGAAGACGAGCAGC
TTCTTGAGGAACGAAAAAAAATTAATAACTATGAAAAAATTCATGAAGCTCTGCAAACGAGCTACAATGCTTTGAATGGT
GAACAGCATGGGTTAGATTGGCTGTCGATTGCGATGCATCATTTAGAAGAAGCAGCTAACCTTGATGAATCTTTAAAGAA
TAGTTCAGATATTGTTTCAAATAGTTACTTTTTATTAGAAGATGCCATTTCAACGATTCGTGATCAGCTGGATTCTCTTG
ATTTTGATACGGAACGGATTGATTTTATTGAAGGGCGCCTAAATGAAATTAACCAATTGAAACGTAAATACGGACGTACG
ATTGAGGAAATTGTCGAATATGGAGCAAAGATTGAAGAAGAAATTGAAACGTTGCTTAATCGGGAAACGCATATTGCTAA
GCTGGAAAAGGAATTAAATTCGATTAAAGCAGATTTACTCATTGAGGCCAAACATTTATCGAGTCTTCGTCAAACCTATG
CAGAGCAATTAACGAAAAAAATTAAGCAAGAACTGAAAGAGTTATATATGGAAAAAACTGTTTTTGAAGCTCATTTTCAT
CAAACGGCTCATACATTTGATGAAACAATCGACAGAGAAATTAATCGAACAGGACTTGATGTCATGGAGTTTTATATTTC
AACGAATCCTGGTGAACCGCTAAAACCGTTATCGAAAATTGCCTCTGGCGGTGAAATGTCTCGTATTATGTTGGCTTTAA
AAAGTATTTTTTCGCAGCATCAAGGGATTACATCGATTATTTTTGATGAAGTCGATACAGGAGTAAGCGGGCGAGTTGCT
CAATCGATTGGAGAAAAAATTTACAAAGTAGCTACAGGTTCTCAAGTGCTTTGTATTTCTCATTTACCTCAAGTCGCTGC
AATGGCTGATACGCATTTGTTTATTGCTAAAAAAGTGACAGAAGGAAGAACACATACATCTGTTACACCATTAGCTGAGG
AAGAAAAAATAAAAGAAATCGGCCGGATGATAGCTGGTGTTGAAATTACTGATTTAACGAAGCAACATGCTAATGAATTA
ATTCAACAAGCTCATAAAATTAAAGTCACATCCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9RPM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.632

100

0.622

Multiple sequence alignment