Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BAOM_RS00520 Genome accession   NZ_CP026095
Coordinates   97980..99368 (+) Length   462 a.a.
NCBI ID   WP_127758641.1    Uniprot ID   -
Organism   Peribacillus asahii strain OM18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92980..104368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAOM_RS00500 (BAOM_0104) - 93227..93688 (+) 462 WP_127758637.1 CtsR family transcriptional regulator -
  BAOM_RS00505 (BAOM_0105) - 93710..94261 (+) 552 WP_127758638.1 UvrB/UvrC motif-containing protein -
  BAOM_RS00510 (BAOM_0106) - 94258..95334 (+) 1077 WP_127758639.1 protein arginine kinase -
  BAOM_RS00515 (BAOM_0107) clpC 95348..97786 (+) 2439 WP_127758640.1 ATP-dependent protease ATP-binding subunit ClpC -
  BAOM_RS00520 (BAOM_0108) radA 97980..99368 (+) 1389 WP_127758641.1 DNA repair protein RadA Machinery gene
  BAOM_RS00525 (BAOM_0109) disA 99372..100445 (+) 1074 WP_127758642.1 DNA integrity scanning diadenylate cyclase DisA -
  BAOM_RS00530 (BAOM_0110) - 100620..101708 (+) 1089 WP_127758643.1 PIN/TRAM domain-containing protein -
  BAOM_RS00535 (BAOM_0111) ispD 101722..102426 (+) 705 WP_286676293.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BAOM_RS00540 (BAOM_0112) ispF 102432..102911 (+) 480 WP_127758644.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50201.70 Da        Isoelectric Point: 6.8334

>NTDB_id=267055 BAOM_RS00520 WP_127758641.1 97980..99368(+) (radA) [Peribacillus asahii strain OM18]
MAKKKTKFMCQSCGYESPKWMGKCPGCGEWNKMVEEVEIVKPGRRGAFAHSDTQIGTGERIKAAPITTIQTEQEPRIATD
LAELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLARKGKKVLYISGEESVKQTKLRADRLGVASENLFVYSETDM
DYIQHAISEVNPDLVIIDSIQTVYQSEVTSAPGSVSQVRECTATLMRIGKTKGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEDGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTRPTDCFIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVLLPSNNMVGWTVPKEVEVIGVSSVAEALQYALGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=267055 BAOM_RS00520 WP_127758641.1 97980..99368(+) (radA) [Peribacillus asahii strain OM18]
GTGGCTAAAAAGAAGACAAAATTTATGTGTCAGTCATGTGGATATGAATCACCGAAGTGGATGGGGAAATGTCCTGGGTG
CGGCGAGTGGAACAAAATGGTGGAGGAAGTCGAAATTGTAAAGCCGGGGAGAAGGGGAGCGTTTGCTCACTCTGATACAC
AGATTGGGACAGGAGAAAGAATTAAAGCTGCTCCGATTACGACGATTCAAACCGAGCAAGAGCCGCGTATTGCAACAGAT
TTAGCAGAATTAAACCGTGCTCTTGGCGGCGGGATTGTGCAAGGTTCGCTTGTTTTAATTGGCGGTGATCCGGGAATTGG
AAAATCAACTTTGCTTCTCCAAGTATCTTCGCAGCTTGCTCGTAAAGGAAAGAAAGTGCTCTACATTTCTGGAGAAGAAT
CGGTGAAGCAAACGAAGTTAAGAGCAGACCGCCTTGGTGTGGCATCTGAGAATCTATTTGTTTATTCTGAAACAGATATG
GATTATATTCAACACGCTATTAGTGAAGTGAATCCTGATTTAGTAATCATCGATTCGATTCAAACGGTCTATCAATCCGA
AGTTACATCTGCACCAGGAAGCGTCTCCCAGGTGCGTGAATGTACAGCTACATTAATGCGAATTGGAAAGACAAAGGGCA
TTGCCATTTTTATTGTCGGGCATGTTACGAAAGAAGGGGCGATTGCCGGTCCACGCTTGCTCGAACATATGGTCGATACG
GTGTTATATTTTGAAGGAGAGCGACATCATACATATCGAATTATTCGAGCAGTGAAAAATCGTTTCGGTTCGACAAACGA
GATGGGGATTTTTGAAATGAAAGAAGATGGCTTAGAAGAAGTAGCCAATCCATCTGAGATTTTTCTAGAGGAGCGGTCCC
AGGGAGCCTCGGGTTCGACTGTTGTTGCCTCGATGGAAGGAACGAGACCAGTCCTCGTTGAAATTCAAGCTTTAATTTCA
CCAACAAGCTTTGGGAATCCGCGTCGTATGGCTACAGGCCTTGATCATAATCGAGTGTCATTGTTAATGGCAGTATTAGA
GAAGCGTGTCGGTTTACTGCTGCAAAATCAAGATGCTTATTTGAAGGTAGCTGGCGGTGTGAAACTGGATGAGCCGGCAA
TTGATTTAGCGGTTGCGATTAGTATTGCTTCCAGCTTTCGAGATAAACCAACAAGACCAACAGATTGCTTTATCGGTGAA
GTAGGCTTAACAGGCGAAGTTAGACGGGTATCTAGAATTGAGCAACGTGTTCAAGAAGCTGCAAAACTTGGATTTGAGCG
GGTGCTTCTTCCGTCCAATAATATGGTTGGTTGGACGGTACCAAAAGAGGTTGAAGTTATAGGCGTTTCATCTGTGGCAG
AAGCGCTTCAATACGCATTAGGGGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.322

100

0.775
  radA Streptococcus pneumoniae Rx1

62.227

99.134

0.617
  radA Streptococcus pneumoniae D39

62.227

99.134

0.617
  radA Streptococcus pneumoniae R6

62.227

99.134

0.617
  radA Streptococcus pneumoniae TIGR4

62.227

99.134

0.617
  radA Streptococcus mitis NCTC 12261

62.227

99.134

0.617
  radA Streptococcus mitis SK321

62.009

99.134

0.615

Multiple sequence alignment