Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   C2U64_RS18940 Genome accession   NZ_CP026089
Coordinates   3635666..3637894 (+) Length   742 a.a.
NCBI ID   WP_002114954.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP005069     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3630666..3642894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U64_RS18915 (C2U64_18905) lnt 3631117..3632676 (+) 1560 WP_002114914.1 apolipoprotein N-acyltransferase -
  C2U64_RS18920 (C2U64_18910) csaA 3632678..3633016 (-) 339 WP_002114937.1 tRNA-binding protein -
  C2U64_RS18925 (C2U64_18915) - 3633162..3633506 (-) 345 WP_002114661.1 hypothetical protein -
  C2U64_RS18930 (C2U64_18920) gspG 3633773..3634288 (-) 516 WP_019768050.1 type II secretion system major pseudopilin GspG -
  C2U64_RS18935 (C2U64_18925) gspF 3634312..3635517 (-) 1206 WP_002114712.1 type II secretion system inner membrane protein GspF -
  C2U64_RS18940 (C2U64_18930) priA 3635666..3637894 (+) 2229 WP_002114954.1 primosomal protein N' Machinery gene
  C2U64_RS18945 (C2U64_18935) kefB 3637971..3639815 (+) 1845 WP_002114812.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  C2U64_RS18950 (C2U64_18940) hslO 3639978..3640853 (+) 876 WP_002114728.1 Hsp33 family molecular chaperone HslO -
  C2U64_RS18955 (C2U64_18945) - 3640991..3641602 (+) 612 WP_002115157.1 LysE family translocator -
  C2U64_RS18960 (C2U64_18950) cbpA 3641749..3642705 (+) 957 WP_005804162.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84025.76 Da        Isoelectric Point: 8.4592

>NTDB_id=267032 C2U64_RS18940 WP_002114954.1 3635666..3637894(+) (priA) [Acinetobacter pittii strain WCHAP005069]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISDLL
DEQPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVELAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=267032 C2U64_RS18940 WP_002114954.1 3635666..3637894(+) (priA) [Acinetobacter pittii strain WCHAP005069]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTACATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCATGTAGGCTCACGCGTCGCTATTTCATTTGGACGTCAAAATCTGA
TTGGCATCATTACTGAAAAAGTTGACCCAAGTGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GACGAACAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCGATTGGCGA
GGTCATGCAAACCGCCCTACCTGCGTTATTGCGTCAGGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATCACGC
CATGTGATAATGTTGAAGCACTTCTTAAACGTTCTGTTAAGCAACAAGACGCCTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAACATTCTTAATTTAAGTGGTGTAGAAACGGCTACACTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGTACGCTTGAACCACACGATTTTAGCCCATCGCCTGTTGAATTGGCACAAATGCCGCTCACGCTAAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCGTAAACGCACAGCATCAATACCAAGCTTTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTACACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTCCCAGAAATCGGTCT
AACCCCTCAAACGATTTCTCGCTTTAAATCACGTTTTAACTGCGATATTGCCCTATTACACTCGGGCTTAAATGACTCCA
AACGCTTGCAGGCATGGCAACAGGCCCAGACTGGCAAAGCATCTATTATTTTAGGGACACGCTCTGCCATCTATACGCCA
CTGCCACGTTTAGGTCTCATCATTTTAGATGAAGAACATGACCTCTCTTATAAACAGCAAGAAGGCTTCCGTTACCATGC
GCGTGATGTCGCACTTTATCGAGGTCACTTGCAAAACTGCCCTGTTATTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGCAAATTAACTTCACTGCAACTTAATCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTTTAATCGAACAGATTAAAAATACCCTAGCTAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTCTGTGAAAGTTGTGGATGGCAAGCAA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTGCCCGATCACTGCCCTGAATGCCAGCAAAAAAGCCTAAAAACCTTAGGTGCTGGAACGGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGATCGTGACAGTACCAGTCGTGTGGGTAGCTGGCAAA
AAATCTATGACCGTATTCATCAAAACAAACCAACAATTTTACTCGGCACTCAAATGTTGGCAAAAGGTCATCATTTCCCA
CACGTAACTTTGGTTGCTATTTTAGACATTGATGCTGGGTTACTGAGTGTCGATATTCGTGCGCCAGAGCGTACTGCGCA
ATTAATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGTGAACACAAAGGCCATGTTTATTTACAGACCTTAAGACCAGATC
ACCCTTTACTAACCACACTCATCGAAAAAGATTATCGGGCGGTTGCTAAACAGACTCTTGCGGAACGTAAAGTCGCATTG
CTGCCACCTTATCGTTATGCAGTACTGATACGTGCAGAATCTAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
GGCGGAACAATTACGCCAAATTGCAGGTGAAATTGTTGATATTTGGGGTCCGATTCCAGCACCGATGGAACGTAAAGCTG
GGCGCTACCGCGCCCACATGGTGATTTTATCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCACAA
TTGGTTCATGCACCACGGCAGCATCAACTTAGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

98.248

100

0.982

Multiple sequence alignment