Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C1467_RS15605 Genome accession   NZ_CP026085
Coordinates   2972078..2972707 (-) Length   209 a.a.
NCBI ID   WP_000793791.1    Uniprot ID   -
Organism   Escherichia coli strain DH5alpha     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2967078..2977707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1467_RS15590 (C1467_15590) helD 2967320..2969374 (-) 2055 WP_001349949.1 DNA helicase IV -
  C1467_RS15595 (C1467_15595) yccF 2969497..2969943 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C1467_RS15600 (C1467_15600) yccS 2969953..2972115 (+) 2163 WP_000875023.1 YccS family putative transporter -
  C1467_RS15605 (C1467_15605) sxy/tfoX 2972078..2972707 (-) 630 WP_000793791.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C1467_RS15610 (C1467_15610) sulA 2972926..2973435 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C1467_RS15620 (C1467_15620) ompA 2973792..2974832 (+) 1041 WP_000750416.1 porin OmpA -
  C1467_RS15625 (C1467_15625) matP 2974908..2975360 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C1467_RS15630 (C1467_15630) ycbZ 2975546..2977306 (+) 1761 WP_000156524.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24120.99 Da        Isoelectric Point: 8.8133

>NTDB_id=266988 C1467_RS15605 WP_000793791.1 2972078..2972707(-) (sxy/tfoX) [Escherichia coli strain DH5alpha]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=266988 C1467_RS15605 WP_000793791.1 2972078..2972707(-) (sxy/tfoX) [Escherichia coli strain DH5alpha]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment