Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   C2E56_RS10795 Genome accession   NZ_CP026084
Coordinates   2135457..2136230 (+) Length   257 a.a.
NCBI ID   WP_000456085.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NJ1606     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2130457..2141230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E56_RS10785 (C2E56_11200) rlmH 2133450..2133929 (-) 480 WP_000768335.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  C2E56_RS10790 (C2E56_11205) htrA 2134130..2135359 (+) 1230 WP_000728357.1 S1C family serine protease Regulator
  C2E56_RS10795 (C2E56_11210) spo0J 2135457..2136230 (+) 774 WP_000456085.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 257 a.a.        Molecular weight: 29283.72 Da        Isoelectric Point: 9.6926

>NTDB_id=266974 C2E56_RS10795 WP_000456085.1 2135457..2136230(+) (spo0J) [Streptococcus agalactiae strain NJ1606]
MEYLETININHIAPNPYQPRLEFNTKELEELADSIKINGLIQPIIVRPSAVFGYELVAGERRLRAAKLAKLESIPAIIKS
YNNDDSMQLAIVENLQRSNLSPIEEAKAYSQLLQKKSMTHEELAKYMGKSRPYISNTIRLLNLPPLITSAIEEGKLSSGH
ARALLSLPDASQQKDWYQRILTEDISVRRLEKLLKQEKKTNHKSLQNKDVFLKHQENELAQFLGSKVKLTINKDGAGNIK
IAFDNQEELNRIINTLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=266974 C2E56_RS10795 WP_000456085.1 2135457..2136230(+) (spo0J) [Streptococcus agalactiae strain NJ1606]
ATGGAATATTTAGAAACGATCAACATCAATCATATTGCTCCAAATCCGTATCAACCTCGCCTAGAATTTAATACAAAAGA
ACTAGAAGAATTAGCCGACTCTATTAAAATTAATGGCCTTATTCAACCCATTATTGTAAGACCGTCAGCAGTCTTTGGTT
ACGAACTGGTAGCCGGAGAACGACGGCTAAGAGCCGCAAAGTTAGCTAAATTGGAAAGTATACCTGCAATTATAAAATCC
TATAATAATGATGATAGTATGCAATTAGCTATTGTCGAAAATTTACAACGATCTAATTTGTCACCTATTGAAGAGGCTAA
AGCCTACTCTCAACTTCTACAAAAGAAAAGTATGACACATGAAGAGTTAGCAAAATATATGGGAAAATCTCGTCCCTATA
TATCAAATACGATACGACTACTAAATTTACCGCCACTAATTACTTCAGCTATTGAAGAAGGAAAACTTTCCTCTGGTCAT
GCGCGTGCACTACTCAGTCTACCAGATGCTAGTCAACAAAAAGATTGGTATCAGAGAATCCTCACTGAAGATATTAGTGT
AAGACGACTAGAGAAGTTATTAAAACAAGAAAAGAAAACAAATCATAAGTCACTTCAAAATAAAGATGTCTTTCTAAAAC
ATCAAGAAAATGAGTTAGCTCAATTTCTAGGTAGCAAAGTGAAACTTACTATTAATAAAGATGGTGCTGGCAATATAAAG
ATTGCTTTCGATAACCAAGAAGAATTAAACAGAATTATCAACACTCTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

57.647

99.222

0.572


Multiple sequence alignment