Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LPC_RS00745 Genome accession   NC_009494
Coordinates   175485..177563 (-) Length   692 a.a.
NCBI ID   WP_079995307.1    Uniprot ID   -
Organism   Legionella pneumophila str. Corby     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 170485..182563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS00730 (LPC_0157) pyk 171802..173226 (-) 1425 WP_011945332.1 pyruvate kinase -
  LPC_RS00735 (LPC_0158) - 173210..174400 (-) 1191 WP_011945333.1 phosphoglycerate kinase -
  LPC_RS00740 (LPC_0159) gap 174411..175403 (-) 993 WP_011945334.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  LPC_RS00745 (LPC_0160) recP/tkt 175485..177563 (-) 2079 WP_079995307.1 transketolase Machinery gene
  LPC_RS00750 (LPC_0161) - 177749..179083 (+) 1335 WP_011945336.1 hypothetical protein -
  LPC_RS00755 (LPC_0162) - 179183..181198 (+) 2016 WP_011945337.1 M3 family metallopeptidase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75893.90 Da        Isoelectric Point: 6.3016

>NTDB_id=26697 LPC_RS00745 WP_079995307.1 175485..177563(-) (recP/tkt) [Legionella pneumophila str. Corby]
MNGLLADLCLLSDNSASVKCKRVGMNSFTELANAVRMLSIDAVNQAQSGHPGMPLGMADIATVLWKKFLKFNPKNPHWFN
RDRFVLSNGHGSMLLYSLLHLTGYNLDINELKNFRQLHSKTPGHPEHGHTPGVETTTGPLGQGLANSVGMALAERVLASH
FNHDHYNLVDHYTYTFAGDGCLMEGISHEACSLAGTLGLGKLIVFYDDNGISIDGKVESWFTDDTTSRFKAYNWQVIGPI
DGHDAAQIEQAISAARENTTQPSLIICKTVIGLGSSVAGSEKAHGSPLSAQDINNVREFFNWKHAPFEIPDSIYKQWDHR
EQGEKEEQQWLQLLHEYRQQHPSEHDEFLRRANGDLPDDWQEISAGFLKQCLNNEKAIATRKASQQCIEFFAPILPEMFG
GSADLTGSNNTDWSGSKAITAHNFSGNYLYYGVREFAMAAIMNGLAVHGGFIPYGGTFLVFADYARNAIRLSALMKQRVI
YVLTHDSIGLGEDGPTHQPIEHIAMLRMTPGMTVWRPADLMETAVAWQQSLEHHNGPSALLLSRQNLPALAHGADAADLI
KKGGYIIADCEGKPDAILIATGSEVQLAITAAEKAKARGLQVRVVSMPCAERFLAQSDAYKNQVLPGQVRTRIAIEAASS
AYWHQFVGFDGAVIGLDCFGVSAPATDAFNYLGITVEKIINTLDTLTKQTMV

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=26697 LPC_RS00745 WP_079995307.1 175485..177563(-) (recP/tkt) [Legionella pneumophila str. Corby]
ATGAATGGTCTTCTTGCCGATTTATGCCTTCTGAGCGACAATAGTGCCTCAGTTAAATGCAAAAGAGTAGGCATGAACAG
TTTTACAGAATTAGCTAATGCAGTACGCATGTTAAGCATCGATGCAGTAAACCAGGCTCAATCAGGCCACCCTGGCATGC
CCTTGGGTATGGCTGATATTGCCACCGTTTTATGGAAAAAATTTCTAAAATTCAACCCCAAAAACCCGCACTGGTTTAAC
AGAGACCGTTTTGTATTATCTAATGGCCATGGTTCCATGCTTCTCTATTCTTTACTGCATTTGACCGGATACAATTTGGA
TATTAACGAGCTTAAAAATTTCCGCCAATTGCACTCAAAAACACCAGGGCATCCGGAACATGGGCACACTCCCGGTGTCG
AAACCACAACGGGGCCATTAGGTCAAGGTTTGGCCAATTCAGTCGGGATGGCATTGGCAGAGCGTGTACTGGCCAGTCAC
TTCAACCACGATCACTATAACCTCGTTGATCATTATACTTATACTTTTGCCGGCGATGGATGCCTGATGGAAGGCATTTC
TCATGAAGCGTGCTCTCTGGCTGGCACTCTTGGTTTGGGAAAACTCATTGTATTTTATGACGACAATGGGATATCTATTG
ATGGCAAGGTAGAATCCTGGTTTACGGACGATACCACGTCTCGCTTTAAAGCCTACAACTGGCAAGTCATAGGCCCCATC
GATGGCCACGACGCAGCTCAAATTGAGCAAGCCATATCAGCAGCACGCGAGAACACGACTCAACCTTCATTAATTATCTG
TAAAACCGTCATAGGACTGGGTTCCTCTGTAGCCGGTAGCGAAAAAGCGCACGGCTCTCCATTGAGTGCCCAAGACATAA
ATAATGTCCGTGAATTTTTTAATTGGAAACATGCTCCCTTCGAAATTCCAGATTCGATATACAAGCAATGGGATCATAGA
GAGCAAGGAGAAAAAGAAGAGCAACAATGGCTGCAGCTCCTGCATGAATACCGGCAACAACATCCATCGGAACACGATGA
GTTTTTGCGTCGTGCCAATGGCGACCTGCCCGATGATTGGCAAGAAATATCGGCTGGATTCCTAAAACAATGCCTGAACA
ATGAGAAAGCCATAGCAACGCGTAAAGCATCGCAGCAATGCATAGAGTTTTTCGCGCCAATATTACCGGAAATGTTTGGC
GGCTCAGCGGATTTGACTGGTTCCAATAATACTGACTGGTCAGGCAGCAAAGCCATCACGGCCCATAATTTTTCCGGAAA
TTACCTTTATTATGGAGTGAGGGAATTTGCCATGGCAGCCATCATGAATGGACTTGCTGTTCATGGAGGATTCATTCCCT
ACGGCGGAACATTCCTTGTTTTCGCAGATTATGCAAGAAATGCCATCCGTTTAAGCGCTTTAATGAAACAAAGAGTGATA
TACGTATTGACTCATGATTCTATCGGTTTAGGGGAAGATGGCCCGACACACCAACCTATAGAACATATCGCTATGTTAAG
AATGACCCCTGGCATGACGGTCTGGCGCCCTGCTGATTTGATGGAAACCGCTGTTGCATGGCAACAATCGTTAGAACATC
ATAATGGACCCTCTGCATTGTTACTCTCAAGACAAAATCTGCCCGCTTTAGCCCATGGCGCCGATGCGGCTGACTTGATT
AAGAAAGGTGGATATATTATTGCAGATTGTGAAGGGAAGCCTGATGCTATCCTGATAGCCACTGGTTCAGAAGTTCAACT
GGCTATAACCGCAGCAGAAAAGGCAAAAGCAAGAGGTCTCCAGGTCAGGGTGGTATCCATGCCCTGTGCTGAGCGATTCC
TTGCCCAGAGTGATGCTTACAAAAACCAGGTATTACCTGGTCAGGTTCGCACACGTATTGCGATAGAAGCAGCTAGCAGT
GCCTATTGGCACCAATTTGTTGGCTTTGACGGCGCTGTCATTGGGCTGGATTGTTTTGGGGTATCAGCTCCTGCTACAGA
TGCTTTTAATTACCTTGGAATTACAGTAGAAAAAATTATCAATACTCTAGATACATTAACCAAACAAACAATGGTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(377-548)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(30-357)

Transketolase, C-terminal domain (Transketolase_C)

(566-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.505

95.087

0.442

Multiple sequence alignment