Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   C2E56_RS02830 Genome accession   NZ_CP026084
Coordinates   500250..501323 (+) Length   357 a.a.
NCBI ID   WP_017647063.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NJ1606     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 495250..506323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E56_RS02800 (C2E56_02885) - 496141..497205 (+) 1065 WP_017647059.1 MmcQ/YjbR family DNA-binding protein -
  C2E56_RS02805 (C2E56_02890) asnA 497320..498312 (+) 993 WP_017647060.1 aspartate--ammonia ligase -
  C2E56_RS02810 (C2E56_02895) - 498357..498806 (-) 450 WP_017647061.1 thiol reductase thioredoxin -
  C2E56_RS02815 (C2E56_02900) rsmD 498937..499476 (+) 540 WP_032459139.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2E56_RS02820 (C2E56_02905) - 499488..499778 (+) 291 WP_000384889.1 hypothetical protein -
  C2E56_RS02825 (C2E56_02910) coaD 499775..500260 (+) 486 WP_000161892.1 pantetheine-phosphate adenylyltransferase -
  C2E56_RS02830 (C2E56_02915) sepM 500250..501323 (+) 1074 WP_017647063.1 SepM family pheromone-processing serine protease Regulator
  C2E56_RS02835 (C2E56_02920) - 501398..502732 (+) 1335 WP_017647064.1 bifunctional metallophosphatase/5'-nucleotidase -
  C2E56_RS02840 (C2E56_02925) - 502802..503380 (+) 579 WP_017647065.1 YutD family protein -
  C2E56_RS02845 (C2E56_02930) rlmN 503431..504537 (+) 1107 WP_017647066.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  C2E56_RS02850 (C2E56_02935) - 504537..505052 (+) 516 WP_000919803.1 VanZ family protein -

Sequence


Protein


Download         Length: 357 a.a.        Molecular weight: 39159.41 Da        Isoelectric Point: 10.4516

>NTDB_id=266941 C2E56_RS02830 WP_017647063.1 500250..501323(+) (sepM) [Streptococcus agalactiae strain NJ1606]
MKNKDPKRKHKSLLGLLKWWIIGFAFLLLVLASLVVRLPYYLEMPGGAYDIRSVLKVNKKADKAKGSYNFVAVSVSQATP
AQVLYAWLTPFTELSSKEETTGGFSNDDYLRINQFYMETSQNESIYQALKLANKQVSLTYKGVYVLNLAKNSTFKDRLHL
ADTVTGVNGKSFKNSSQLIKYVAALHLGDKVKVQYTSQGKKKESVGKVIKLSNGKNGIGIGLTDHTEVSSDVPVDFNTEG
VGGPSAGLMFTLAIYDQLVKEDLRKGRKIAGTGTIEQNGHVGDIGGAGLKVVSAAKKGMDIFFVPNNPIDKKAKKGKTKV
QTNYQEAKAAAKRLGTKMKIVPVQNVQQAIDYLKKTK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=266941 C2E56_RS02830 WP_017647063.1 500250..501323(+) (sepM) [Streptococcus agalactiae strain NJ1606]
GTGAAGAATAAAGATCCAAAAAGAAAACATAAAAGTTTACTAGGTCTGCTTAAATGGTGGATTATAGGTTTTGCTTTTTT
ATTGTTAGTATTAGCAAGCCTTGTGGTGAGGCTACCTTATTATTTGGAAATGCCAGGTGGAGCTTATGATATCCGTTCGG
TATTGAAAGTGAATAAAAAGGCTGATAAAGCTAAGGGTTCGTACAATTTTGTAGCGGTATCTGTCAGTCAAGCAACGCCA
GCTCAGGTTCTTTATGCTTGGTTAACTCCTTTTACAGAATTATCTAGTAAAGAGGAGACAACAGGTGGCTTTAGTAATGA
CGATTATCTCAGAATTAATCAATTCTACATGGAGACTTCTCAAAATGAGTCCATCTATCAAGCTTTAAAGTTAGCTAATA
AGCAAGTATCTCTTACTTATAAAGGAGTTTATGTGCTTAACTTAGCTAAAAATTCGACATTTAAAGATAGATTACATTTA
GCTGATACAGTCACAGGAGTTAATGGCAAAAGTTTCAAAAATTCTTCTCAACTTATCAAATATGTTGCAGCTCTTCATCT
AGGTGATAAAGTAAAGGTACAATACACAAGTCAAGGTAAAAAGAAAGAATCAGTTGGTAAAGTTATTAAACTATCAAACG
GTAAAAATGGTATTGGTATCGGTTTGACAGACCATACAGAAGTATCATCTGATGTTCCTGTGGACTTTAATACTGAAGGT
GTTGGAGGACCAAGTGCAGGTTTAATGTTTACTTTAGCGATTTACGACCAATTGGTTAAAGAAGATTTACGTAAAGGACG
TAAGATTGCAGGTACTGGTACTATTGAGCAAAATGGACATGTTGGCGATATTGGTGGAGCAGGTTTGAAAGTTGTTTCAG
CGGCTAAAAAAGGAATGGATATTTTCTTTGTTCCTAATAATCCGATCGATAAAAAAGCTAAAAAAGGCAAAACAAAGGTT
CAGACGAATTATCAAGAGGCAAAAGCAGCAGCTAAGCGATTAGGTACGAAGATGAAAATTGTACCAGTTCAAAATGTTCA
GCAAGCTATTGATTATTTGAAAAAAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

69.322

94.958

0.658


Multiple sequence alignment