Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RK88_RS00590 Genome accession   NZ_CP026071
Coordinates   108490..109206 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain FDAARGOS_30     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 103490..114206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK88_RS00575 (RK88_000575) - 104577..105527 (+) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -
  RK88_RS00580 (RK88_000580) - 105676..107160 (+) 1485 WP_001791588.1 sucrose-6-phosphate hydrolase -
  RK88_RS00585 (RK88_000585) - 107157..108116 (+) 960 WP_001253292.1 carbohydrate kinase -
  RK88_RS00590 (RK88_000590) agrA 108490..109206 (-) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  RK88_RS00595 (RK88_000595) - 109225..110517 (-) 1293 WP_000387814.1 GHKL domain-containing protein -
  RK88_RS00600 (RK88_000600) - 110542..110682 (-) 141 WP_000735197.1 cyclic lactone autoinducer peptide -
  RK88_RS00605 (RK88_000605) - 110686..111249 (-) 564 WP_001105709.1 accessory gene regulator AgrB -
  RK88_RS14970 hld 111539..111619 (+) 81 WP_000046022.1 delta-hemolysin -
  RK88_RS00615 (RK88_000615) - 112222..113007 (-) 786 WP_000867948.1 carbon-nitrogen family hydrolase -
  RK88_RS00620 (RK88_000620) - 113368..113994 (-) 627 WP_042904925.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=266543 RK88_RS00590 WP_000688492.1 108490..109206(-) (agrA) [Staphylococcus aureus strain FDAARGOS_30]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=266543 RK88_RS00590 WP_000688492.1 108490..109206(-) (agrA) [Staphylococcus aureus strain FDAARGOS_30]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATCAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment