Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STER_RS02305 Genome accession   NC_008532
Coordinates   415526..415969 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus LMD-9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 410526..420969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STER_RS02285 (STER_0465) - 411049..411801 (-) 753 WP_011680801.1 NUDIX domain-containing protein -
  STER_RS02290 (STER_0466) - 411865..412972 (-) 1108 Protein_383 AAA family ATPase -
  STER_RS02295 (STER_0467) gdhA 413316..414668 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STER_RS02300 (STER_0468) - 414926..415336 (+) 411 WP_011680804.1 peptide deformylase -
  STER_RS02305 (STER_0469) rcrR 415526..415969 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  STER_RS02310 (STER_0470) rcrP 415973..417787 (+) 1815 WP_011680805.1 ABC transporter ATP-binding protein Regulator
  STER_RS02315 (STER_0471) rcrQ 417777..419555 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  STER_RS02320 (STER_0472) - 419711..420082 (+) 372 WP_224103209.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=26651 STER_RS02305 WP_002945408.1 415526..415969(+) (rcrR) [Streptococcus thermophilus LMD-9]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=26651 STER_RS02305 WP_002945408.1 415526..415969(+) (rcrR) [Streptococcus thermophilus LMD-9]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment