Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AXA56_RS22195 Genome accession   NZ_CP031609
Coordinates   4480105..4480710 (-) Length   201 a.a.
NCBI ID   WP_042003201.1    Uniprot ID   -
Organism   Escherichia coli strain N3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4475105..4485710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXA56_RS22170 (AXA56_22170) aes 4475246..4476205 (+) 960 WP_116836743.1 acetyl esterase -
  AXA56_RS22175 (AXA56_22175) hemH 4476202..4477164 (-) 963 WP_001250117.1 ferrochelatase -
  AXA56_RS22180 (AXA56_22180) adk 4477296..4477940 (-) 645 WP_001220233.1 adenylate kinase -
  AXA56_RS22190 (AXA56_22190) htpG 4478121..4479995 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  AXA56_RS22195 (AXA56_22195) recR 4480105..4480710 (-) 606 WP_042003201.1 recombination mediator RecR Machinery gene
  AXA56_RS22200 (AXA56_22200) ybaB 4480710..4481039 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AXA56_RS22205 (AXA56_22205) dnaX 4481092..4483023 (-) 1932 WP_116836744.1 DNA polymerase III subunit gamma/tau -
  AXA56_RS22210 (AXA56_22210) apt 4483152..4483703 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AXA56_RS22220 (AXA56_22220) ybaN 4483856..4484233 (-) 378 WP_001188905.1 DUF454 family protein -
  AXA56_RS22225 (AXA56_22225) priC 4484303..4484830 (+) 528 WP_001589812.1 primosomal replication protein N'' -
  AXA56_RS22230 (AXA56_22230) rsmS 4484844..4485008 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21962.01 Da        Isoelectric Point: 5.0631

>NTDB_id=266489 AXA56_RS22195 WP_042003201.1 4480105..4480710(-) (recR) [Escherichia coli strain N3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAQEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=266489 AXA56_RS22195 WP_042003201.1 4480105..4480710(-) (recR) [Escherichia coli strain N3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAC
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCTCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.729

99.005

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443