Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RK83_RS09960 Genome accession   NZ_CP026069
Coordinates   1896608..1897054 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_25     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1891608..1902054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK83_RS09925 (RK83_009925) - 1892102..1892305 (+) 204 WP_000087558.1 YqgQ family protein -
  RK83_RS09930 (RK83_009930) - 1892302..1893288 (+) 987 WP_000161311.1 ROK family glucokinase -
  RK83_RS09935 (RK83_009935) - 1893288..1893617 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RK83_RS09940 (RK83_009940) - 1893614..1894237 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RK83_RS09945 (RK83_009945) comGA 1894289..1895263 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  RK83_RS09950 (RK83_009950) comGB 1895235..1896305 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  RK83_RS09955 (RK83_009955) comGC 1896319..1896630 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RK83_RS09960 (RK83_009960) comGD 1896608..1897054 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  RK83_RS09965 (RK83_009965) comGE 1897041..1897340 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  RK83_RS09970 (RK83_009970) comGF 1897258..1897755 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  RK83_RS09975 (RK83_009975) - 1897852..1897998 (+) 147 WP_001792109.1 hypothetical protein -
  RK83_RS09980 (RK83_009980) - 1897988..1898512 (+) 525 WP_001015120.1 shikimate kinase -
  RK83_RS09985 (RK83_009985) gcvT 1898671..1899762 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  RK83_RS09990 (RK83_009990) gcvPA 1899782..1901128 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=266483 RK83_RS09960 WP_001788899.1 1896608..1897054(+) (comGD) [Staphylococcus aureus strain FDAARGOS_25]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=266483 RK83_RS09960 WP_001788899.1 1896608..1897054(+) (comGD) [Staphylococcus aureus strain FDAARGOS_25]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment