Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AXA56_RS14020 Genome accession   NZ_CP031609
Coordinates   2858654..2860081 (-) Length   475 a.a.
NCBI ID   WP_000980603.1    Uniprot ID   -
Organism   Escherichia coli strain N3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2853654..2865081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXA56_RS13995 (AXA56_13995) hisL 2854679..2854729 (-) 51 WP_001364200.1 his operon leader peptide -
  AXA56_RS14000 (AXA56_14000) yeeZ 2855156..2855980 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  AXA56_RS14005 (AXA56_14005) yeeY 2856026..2856955 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AXA56_RS14010 (AXA56_14010) yoeI 2857170..2857232 (+) 63 WP_010723108.1 membrane protein YoeI -
  AXA56_RS14015 (AXA56_14015) plaP 2857222..2858580 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AXA56_RS14020 (AXA56_14020) sbcB 2858654..2860081 (-) 1428 WP_000980603.1 exodeoxyribonuclease I Machinery gene
  AXA56_RS14025 (AXA56_14025) dacD 2860290..2861456 (+) 1167 WP_116836500.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AXA56_RS14030 (AXA56_14030) sbmC 2861575..2862048 (+) 474 WP_042003869.1 DNA gyrase inhibitor SbmC -
  AXA56_RS14035 (AXA56_14035) yeeA 2862246..2863304 (+) 1059 WP_001200891.1 FUSC family protein -
  AXA56_RS14040 (AXA56_14040) tmaR 2863476..2863805 (+) 330 WP_000450409.1 DUF496 family protein -
  AXA56_RS14045 (AXA56_14045) - 2863906..2864202 (-) 297 Protein_2579 EutP/PduV family microcompartment system protein -
  AXA56_RS14050 (AXA56_14050) - 2864205..2864540 (+) 336 WP_042003867.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=266471 AXA56_RS14020 WP_000980603.1 2858654..2860081(-) (sbcB) [Escherichia coli strain N3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=266471 AXA56_RS14020 WP_000980603.1 2858654..2860081(-) (sbcB) [Escherichia coli strain N3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGCCAGCCGCGCCTGTTTGATTATCTTTTCACGCATCGTAATA
AACATAAGCTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581